View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0931_low_1 (Length: 627)

Name: NF0931_low_1
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0931_low_1
NF0931_low_1
[»] chr2 (15 HSPs)
chr2 (247-483)||(39503599-39503835)
chr2 (88-245)||(39502739-39502895)
chr2 (482-555)||(39503977-39504050)
chr2 (316-452)||(39100024-39100160)
chr2 (323-467)||(39126913-39127055)
chr2 (482-555)||(39099761-39099834)
chr2 (482-555)||(39604490-39604563)
chr2 (493-555)||(2362853-2362915)
chr2 (182-239)||(39101172-39101229)
chr2 (315-387)||(39126048-39126120)
chr2 (493-555)||(39144770-39144832)
chr2 (324-414)||(39452050-39452140)
chr2 (165-234)||(39605442-39605509)
chr2 (323-385)||(39139802-39139866)
chr2 (296-352)||(39604792-39604847)
[»] chr3 (1 HSPs)
chr3 (491-555)||(51576159-51576223)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 247 - 483
Target Start/End: Original strand, 39503599 - 39503835
Alignment:
Q  247 tcgtttgagttatctgacacggaaacgggcctaatcctaagagtctcgatgcttcatagataaaaaatgatatactaatttaaagtctatttcattttcc 346  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39503599 tcgtttgagttgtctgacacgggaacgggcctaatcctaagagtctcgatgcttcatagataaaaaatgatatactaatttaaagtctatttcattttcc 39503698  T
Q  347 aagcattaaccaagataccaaatttcacttaacaaatgagacagaacagttggcagaaataaaatgaaacctttgcatctagtgcatcaagccaattata 446  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39503699 aagcattagccaagataccaaatttctcttaacaaatgagacagaacagttggcagaaataaaatgaaacctttgcatctagtgcatcaagccaattata 39503798  T
Q  447 tatcagatcaatttcctaccaccagaaaatatcttaa 483  Q
    |||||||||||||||||||||||||||||||||||||    
T  39503799 tatcagatcaatttcctaccaccagaaaatatcttaa 39503835  T

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Target: chr2; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 88 - 245
Target Start/End: Original strand, 39502739 - 39502895
Alignment:
Q  88 gaaaaatgactacatgtaaaacatttctacatatcatactcaagcctttgataaatttatagacnnnnnnnnnnnnggcaaaatacaagaaagaaagaaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||    
T  39502739 gaaaaatgactacatgtaaaacatttctacatatcatactcaagcctttgataaatttatagaccaaaaaaaaaa-ggcaaaatacaagaaagaaagaaa 39502837  T
Q  188 gaacaggcatcaacaaaattgagataacactgtttgataatcttctcttgagagaatc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39502838 gaacaggcatcaacaaaattgagataacactgtttgataatcttctcttgagagaatc 39502895  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 482 - 555
Target Start/End: Original strand, 39503977 - 39504050
Alignment:
Q  482 aaccaagagttccaaacagctctacagctatctcgtgctgagcagcaaaaccaaaaagcttgaaaacttcatct 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39503977 aaccaagagttccaaacagctctacagctatctcgtgctgagcagcaaaaccaaaaagcttgaaaacttcatct 39504050  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 316 - 452
Target Start/End: Complemental strand, 39100160 - 39100024
Alignment:
Q  316 atatactaatttaaagtctatttcattttccaagcattaaccaagataccaaatttcacttaacaaatgagacagaacagttggcagaaataaaatgaaa 415  Q
    ||||| ||| || |||||||||||||||||| || | ||  |||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| |||    
T  39100160 atatattaacttgaagtctatttcattttccgagaactagtcaagataccaaatttctcttaacaaatgagacagaactgttggaagaaacaaaataaaa 39100061  T
Q  416 cctttgcatctagtgcatcaagccaattatatatcag 452  Q
    |||| ||||| |||| || |||||||||| |||||||    
T  39100060 ccttagcatcaagtgtatgaagccaattacatatcag 39100024  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 323 - 467
Target Start/End: Complemental strand, 39127055 - 39126913
Alignment:
Q  323 aatttaaagtctatttcattttccaagcattaaccaagataccaaatttcacttaacaaatgagacagaacagttggcagaaataaaatgaaacctttgc 422  Q
    ||||| ||||||||| ||||||||||||| || |||| |||| ||||||| |||||||||||||||||||  ||||| |||||   ||||||||||||||    
T  39127055 aatttcaagtctatt-cattttccaagcactagccaaaatacaaaatttctcttaacaaatgagacagaaatgttggaagaaacgcaatgaaacctttgc 39126957  T
Q  423 atctagtgcatcaagccaattatatatcagatcaatttcctacca 467  Q
    ||| | || || | || ||||| ||||||| ||||||| ||||||    
T  39126956 atcaaatgtatgatgcaaattacatatcag-tcaattttctacca 39126913  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 482 - 555
Target Start/End: Complemental strand, 39099834 - 39099761
Alignment:
Q  482 aaccaagagttccaaacagctctacagctatctcgtgctgagcagcaaaaccaaaaagcttgaaaacttcatct 555  Q
    |||| ||| ||||||| |||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  39099834 aacccagaattccaaagagctttacagctatcttgtgctgagcagcaaacccaaaaagctttaaaacttcatct 39099761  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 482 - 555
Target Start/End: Complemental strand, 39604563 - 39604490
Alignment:
Q  482 aaccaagagttccaaacagctctacagctatctcgtgctgagcagcaaaaccaaaaagcttgaaaacttcatct 555  Q
    |||| |||||||||||||||||||||||||||| || ||||||||||||  | |||||||| ||||||||||||    
T  39604563 aacccagagttccaaacagctctacagctatcttgtcctgagcagcaaactcgaaaagctttaaaacttcatct 39604490  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 493 - 555
Target Start/End: Complemental strand, 2362915 - 2362853
Alignment:
Q  493 ccaaacagctctacagctatctcgtgctgagcagcaaaaccaaaaagcttgaaaacttcatct 555  Q
    |||||||||||||||| ||||| ||| ||||||||||| ||||||||||| |||| |||||||    
T  2362915 ccaaacagctctacagatatcttgtgttgagcagcaaacccaaaaagctttaaaatttcatct 2362853  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 39101229 - 39101172
Alignment:
Q  182 aagaaagaacaggcatcaacaaaattgagataacactgtttgataatcttctcttgag 239  Q
    ||||||||||||| | ||||||| |||||||||| |||||||| ||||||||||||||    
T  39101229 aagaaagaacagggaccaacaaagttgagataaccctgtttgagaatcttctcttgag 39101172  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 387
Target Start/End: Complemental strand, 39126120 - 39126048
Alignment:
Q  315 gatatactaatttaaagtctatttcattttccaagcattaaccaagataccaaatttcacttaacaaatgaga 387  Q
    ||||||| ||||| |||| ||||||||||||||||||||  |||||||  ||| |||| ||||||||||||||    
T  39126120 gatatacaaatttgaagtttatttcattttccaagcattggccaagatttcaattttctcttaacaaatgaga 39126048  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 555
Target Start/End: Complemental strand, 39144832 - 39144770
Alignment:
Q  493 ccaaacagctctacagctatctcgtgctgagcagcaaaaccaaaaagcttgaaaacttcatct 555  Q
    |||||||||||||||||||| |||||||||| | |||  ||||||||||| ||||| ||||||    
T  39144832 ccaaacagctctacagctatgtcgtgctgagaaacaagtccaaaaagctttaaaacatcatct 39144770  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 324 - 414
Target Start/End: Complemental strand, 39452140 - 39452050
Alignment:
Q  324 atttaaagtctatttcattttccaagcatta--accaagataccaaatttcacttaacaaatgagacagaacagttggcagaaataaaatgaa 414  Q
    |||| ||||| ||||||||||||||||||||  || |||||  ||| |||| |||||||||||||||  |||||||||  |||| ||||||||    
T  39452140 atttcaagtcaatttcattttccaagcattaacactaagatgtcaattttcccttaacaaatgagac--aacagttgggggaaacaaaatgaa 39452050  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 39605509 - 39605442
Alignment:
Q  165 gcaaaatacaagaaagaaagaaagaacaggcatcaacaaaattgagataacactgtttgataatcttctc 234  Q
    |||||||||||||||  ||||||| ||  | | |||||||||||||||||| |||||||| |||||||||    
T  39605509 gcaaaatacaagaaa--aagaaaggacgcggaccaacaaaattgagataaccctgtttgagaatcttctc 39605442  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 39139866 - 39139802
Alignment:
Q  323 aatttaaagtctatttcattttccaagcatta--accaagataccaaatttcacttaacaaatga 385  Q
    ||||| ||||||||||||||||||| ||||||  ||||||||  ||| |||| ||||||||||||    
T  39139866 aatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaacaaatga 39139802  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 39604847 - 39604792
Alignment:
Q  296 tgcttcatagataaaaaatgatatactaatttaaagtctatttcattttccaagcat 352  Q
    ||||||||||||||| || || ||| ||||| || ||||||||||||||||||||||    
T  39604847 tgcttcatagataaagaaagagatattaattgaa-gtctatttcattttccaagcat 39604792  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 51576223 - 51576159
Alignment:
Q  491 ttccaaacagctctacagctatctcgtgctgagcagcaaaaccaaaaagcttgaaaacttcatct 555  Q
    |||||||||||||||| ||||| | |||||||||| |||| ||||||  ||| |||| |||||||    
T  51576223 ttccaaacagctctactgctattttgtgctgagcaacaaatccaaaatacttcaaaatttcatct 51576159  T

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