View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0931_low_12 (Length: 447)

Name: NF0931_low_12
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0931_low_12
NF0931_low_12
[»] chr6 (6 HSPs)
chr6 (351-429)||(13936995-13937073)
chr6 (351-432)||(14029054-14029133)
chr6 (113-181)||(14108345-14108413)
chr6 (213-249)||(14113298-14113334)
chr6 (121-177)||(14020162-14020218)
chr6 (213-249)||(14107138-14107174)


Alignment Details
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 13936995 - 13937073
Alignment:
Q  351 aaggattctggtcctaataattatcacacaaattatcacgtatatatttttgttcctaattacttaaatatcaatgtat 429  Q
    ||||||| || |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  13936995 aaggattatgatcctaataattatcacacaaattataccgtatatatttttgttcctaattacttaaatatcaatgtat 13937073  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 432
Target Start/End: Original strand, 14029054 - 14029133
Alignment:
Q  351 aaggattctggtcctaataattatcacacaaattatcacgtatatatttttgttcctaattacttaaatatcaatgtattgt 432  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||    
T  14029054 aaggattctgatcctaataattattacacaaattatcccgtata--tttttgttcctaattacttaaatatcaatttattgt 14029133  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 14108345 - 14108413
Alignment:
Q  113 ctttcctcacctccttgctggcttagaaatggatcttttgcatgtctttatcgattctcatgttgatgt 181  Q
    |||| |||||||||||| |||||||||| ||| ||||||   || ||||||||||||||||||||||||    
T  14108345 ctttactcacctccttgatggcttagaagtgggtctttttactgcctttatcgattctcatgttgatgt 14108413  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 14113298 - 14113334
Alignment:
Q  213 gagtaaagataacgtagaagactttagagtctttcat 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  14113298 gagtaaagataacgtagaagactttagagtctttcat 14113334  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 14020162 - 14020218
Alignment:
Q  121 acctccttgctggcttagaaatggatcttttgcatgtctttatcgattctcatgttg 177  Q
    |||||||||||||||||||| ||| ||| |||  ||||||| |||||||||||||||    
T  14020162 acctccttgctggcttagaagtgggtctcttggctgtctttgtcgattctcatgttg 14020218  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 14107138 - 14107174
Alignment:
Q  213 gagtaaagataacgtagaagactttagagtctttcat 249  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  14107138 gagtaaagataacgttgaagactttatagtctttcat 14107174  T

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