View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_16 (Length: 417)
Name: NF0931_low_16
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 29 - 376
Target Start/End: Complemental strand, 40698145 - 40697775
Alignment:
| Q |
29 |
aaattaaacatacacgtgctgatccacacaatgaggaaaatgagttagatcctcataatggcattaaaattagggtttgctaaagattaaaatgtgtatc |
128 |
Q |
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| T |
40698145 |
aaattaaacatacacgtgctgatccacacaatgaggaaaatgagttagatcctcataatggcattaaaattagggtttgctaaagattaaaatgtgtatc |
40698046 |
T |
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| Q |
129 |
tggccacatgtgtaacannnnnnnnn-----gagaggccacatgtataacatttagtacaggaccatatatacagctaattccaccaataggaataaaga |
223 |
Q |
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| T |
40698045 |
tggccacatgtgtaacattttttttttttttgagaggccacatgtataacatttagtacaggaccatatatacagctaattccaccaataggaataaaga |
40697946 |
T |
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| Q |
224 |
gaaagaaattttttcagaaaaga-----------------gaaagtaaattaaccaccaattacataag-acactatggttttcaaccaacaaatagacg |
305 |
Q |
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| T |
40697945 |
gaaagaaattttttcagaaaagaaaaaagagagagaaagagaaagtaaattaaccaccaattacataagcacactatggttttcaaccaacaaatagacg |
40697846 |
T |
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| Q |
306 |
cgttcctttctctatatattgcccaacctccctctactgtttccactcaaaatagatcaaaatcatccttt |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40697845 |
cgttcctttctctatatattgcccaacctccctctactgtttccactcaaaatagatcaaaatcatccttt |
40697775 |
T |
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