View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0931_low_17 (Length: 412)
Name: NF0931_low_17
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0931_low_17 |
 |  |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 89 - 338
Target Start/End: Original strand, 6324310 - 6324557
Alignment:
Q |
89 |
tatatatgcggaggaaaatgcttgattagttgatgagaaaaatgcttggggtaggaaatgaaaatatgtggctggaaaatacaaatcaaggctggaatcc |
188 |
Q |
|
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
6324310 |
tatatatgcggaggaaaatactt--ttagttgatgagaaaaatgcttggggtaggaaatgaaaatatgtggctggaaaatacaaatcaaggctggaatcc |
6324407 |
T |
 |
Q |
189 |
atggctaaacacttcccattttaagtgaagaagaaaatgcgtggaattgggttgaactgggaatacttaattacctgggaattcttaagtttgtgacgca |
288 |
Q |
|
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
6324408 |
atggctaaacacttctcattttaagtgaagaagaaaatgcgtggaattgggttgaactgggaatacttaattacctgggaattcttaagtttgtgacgca |
6324507 |
T |
 |
Q |
289 |
agaaatgcgtgacaaaataaagataaaagaaaatgaaaatgtatagtata |
338 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
6324508 |
agaaatgcgtgacaaaataaagataaaagaaaatgaaaatgtatagtata |
6324557 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University