View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0931_low_17 (Length: 412)

Name: NF0931_low_17
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0931_low_17
NF0931_low_17
[»] chr7 (1 HSPs)
chr7 (89-338)||(6324310-6324557)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 89 - 338
Target Start/End: Original strand, 6324310 - 6324557
Alignment:
89 tatatatgcggaggaaaatgcttgattagttgatgagaaaaatgcttggggtaggaaatgaaaatatgtggctggaaaatacaaatcaaggctggaatcc 188  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6324310 tatatatgcggaggaaaatactt--ttagttgatgagaaaaatgcttggggtaggaaatgaaaatatgtggctggaaaatacaaatcaaggctggaatcc 6324407  T
189 atggctaaacacttcccattttaagtgaagaagaaaatgcgtggaattgggttgaactgggaatacttaattacctgggaattcttaagtttgtgacgca 288  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6324408 atggctaaacacttctcattttaagtgaagaagaaaatgcgtggaattgggttgaactgggaatacttaattacctgggaattcttaagtttgtgacgca 6324507  T
289 agaaatgcgtgacaaaataaagataaaagaaaatgaaaatgtatagtata 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
6324508 agaaatgcgtgacaaaataaagataaaagaaaatgaaaatgtatagtata 6324557  T

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