View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_18 (Length: 396)
Name: NF0931_low_18
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 31348277 - 31347924
Alignment:
| Q |
30 |
caaatgacagtgaatcatgaatctgaaggtaggattcgtcgctagcttcgttttgatatctcgtttgcgcgattcggataaggaatgaagaagttacgtc |
129 |
Q |
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| T |
31348277 |
caaatcacagtgaatcatgtatcggaccgtaggattcgtcactagcttcgttttgatatctcgtttgcgcgattcggataaggaacgaagaagttacatc |
31348178 |
T |
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| Q |
130 |
caaaagaagatgaagatggaggagggagggtggcctacgggtttggatagagaagagagtgaatttgttgattaatgagttttggaccacaaacttacta |
229 |
Q |
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| T |
31348177 |
caaaacaagatgaagatggaggagggagggtggcttacgggtttggatagagaatagagtaaatttgttgattaatgagttttggaccacaaacttacta |
31348078 |
T |
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| Q |
230 |
tatatagtgttttgtggttttggaaat-aactgaactcggttttcacag-tttaaggtacacgtaactaataaagttctatctaactctcatgaacttct |
327 |
Q |
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| T |
31348077 |
tatatagtgttt--tgattttggaaataaactgaaatcgtatttcacggttttaaggtacacataactgataaagttctatctaactcagatggacttct |
31347980 |
T |
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| Q |
328 |
aatcagtcccaaacatcttagaattgtctctttattcaaaaaccactattcatctc |
383 |
Q |
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| T |
31347979 |
aatcggtcccaaacatcttagaattgtctccttattcaaaaaccactagtcatctc |
31347924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 22628705 - 22628633
Alignment:
| Q |
53 |
tgaaggtaggattcgtcgctagcttcgttttgatatctcgtttgcgcgattcggataaggaatgaagaagtta |
125 |
Q |
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| T |
22628705 |
tgaaggtaggattcaccgagggcttcgttttgatatcttgtttgcgcgattcagacaaggaacaaagaagtta |
22628633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 26818101 - 26818016
Alignment:
| Q |
63 |
attcgtcgctagcttcgttttgatatctcgtttgcgcgattcggataaggaatgaagaagttacgtccaaaagaagatgaagatgg |
148 |
Q |
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| T |
26818101 |
attcatcgctagcttcgttttgatatctcgtttgcatgattttgacaaggaacaaagaaattatggctaaaacaagatgaagatgg |
26818016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 24893473 - 24893534
Alignment:
| Q |
297 |
ataaagttctat-ctaactctcatgaacttctaatcagtcccaaacatcttagaattgtctc |
357 |
Q |
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| T |
24893473 |
ataaagttctattctaattctgataaacttgtaatcggtctcaaacatcttagaattgtctc |
24893534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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