View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0931_low_19 (Length: 381)

Name: NF0931_low_19
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0931_low_19
NF0931_low_19
[»] chr8 (1 HSPs)
chr8 (87-381)||(14225340-14225635)


Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 87 - 381
Target Start/End: Complemental strand, 14225635 - 14225340
Alignment:
Q  87 tacttgattacaagtttgaattttggtatgcaatgctcttgaaaatccaaatcttatgatacgtatcaggttatgataaaaaa-taaaccagcacagtca 185  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||    
T  14225635 tacttgattacaaatttgaattttggtatgcaatgctcttgaaattccaaatcttatgatacttatcaggttatcataaaaaaataaaccagcacggtca 14225536  T
Q  186 aacagctcgaatagtaagaggtttaagagtgatgtggtggtcgtgctagagataactcggcaaacagctgacccttcatctaatccttcacctttgcttg 285  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14225535 aacagctcgaatggtgagaggtttaagagtgatgtggtggtcgtgctagagataactcggcaaacagctgacccttcatctaatccttcacctttgcttg 14225436  T
Q  286 gaccatctttactctcccatccctcaccatttcctgaaccatctttgttatcccatccttcaactttgcctggaatgtcgtttttatcctatcctt 381  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14225435 gaccatctttactctcccatccttcaccatttcctgaaccatctttgttatcccatccttcaactttgcatggaatgtcgtttttatcctatcctt 14225340  T

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