View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_20 (Length: 380)
Name: NF0931_low_20
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 30 - 371
Target Start/End: Complemental strand, 44109274 - 44108929
Alignment:
| Q |
30 |
cttgtatcgattctaagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaa |
129 |
Q |
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| T |
44109274 |
cttgtatcgattctaagtgtagatagcacattctcctctttctgttggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaa |
44109175 |
T |
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| Q |
130 |
gagatttcatatgcacttgaaattgtatttgtgtactttttgtatattcagtcatgacatttaagtgttaattatcattgata-----gcgagccacaat |
224 |
Q |
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| T |
44109174 |
gagatttcatatgcacttgaaattgtatttgtgtactttttgtatattcagtcatgacatttaagtgttaattatcattgatagcgaagcgagccacaat |
44109075 |
T |
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| Q |
225 |
cgatgagaatgcttgctatttgattgttctcctgtagtatgtcatgccgagccaagtttctacattcattttgtcagaatgaagagtttcttaattttgt |
324 |
Q |
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| T |
44109074 |
cgatgagaatgcttgcta-ttgattattctccagtagtatgtcatgctgagccaagtttctacattcattttgtcagaatgaagagtttcttaattttgt |
44108976 |
T |
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| Q |
325 |
acaaggataaaaatgttgcaatttgtaagtgtgtaagagatattgtt |
371 |
Q |
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| T |
44108975 |
acaaggataaaaatgttgcaatttgtaagtgtgtaagagatattgtt |
44108929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 44 - 294
Target Start/End: Complemental strand, 44146781 - 44146531
Alignment:
| Q |
44 |
aagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaagagatttcatatgc |
143 |
Q |
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| T |
44146781 |
aagtgtagatagcacgttcttctctttctgtcgggaaatgctttggcaaaacatttagtacctgtggtgtagtggcgggtgagtaagagatttcatatgc |
44146682 |
T |
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| Q |
144 |
acttgaaattgtatttgtgtactttttgtatattcagtcatgacatttaagtgttaattatcattgatagcgagccacaatcgatgagaatgcttgctat |
243 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
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| T |
44146681 |
acttgaaattgtatttctgtgctttttgtatattcagtcatgacatttaagtgttaattatcgttgatgctgagccacaatcaatgagaatgcttgctat |
44146582 |
T |
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| Q |
244 |
ttgattgttctcctgtagtatgtcatgccgagccaagtttctacattcatt |
294 |
Q |
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| T |
44146581 |
ttgattattcccctgtagtatttcatgctgagtcaggtttcaacattcatt |
44146531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 44145900 - 44145853
Alignment:
| Q |
301 |
gaatgaagagtttcttaattttgtacaaggataaaaatgttgcaattt |
348 |
Q |
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| T |
44145900 |
gaatgaagagtttcttcattttgtacaaggataaaaatgttgcaattt |
44145853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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