View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_22 (Length: 370)
Name: NF0931_low_22
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1522242 - 1522017
Alignment:
| Q |
1 |
gtaaccactgtccatgccaattgttgtaggagcatcactgccaaggtggctgatttaaagaaaacccttcgtgattggaaaagatttaggaggttagggg |
100 |
Q |
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| T |
1522242 |
gtaaccactgtccatgccaattgttgtaggagcatcactgccaaggtggctgatttaaagaaaacccttcgtgattggaaaagatttaggaggttagggg |
1522143 |
T |
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| Q |
101 |
ttaattctactgtaaatgtctattggaacactcacgagtggtgtttagagtcttgggataatgacctaatataataatggatt-ttttggaggtaatata |
199 |
Q |
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| T |
1522142 |
ttaattctactgtaaatgtctattggaacactcacgagtggtgtttagagtcttgggataatgacctaatataataatggatttttttagaggta----a |
1522047 |
T |
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| Q |
200 |
tataacaatggtttagtcatcactcatcac |
229 |
Q |
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| T |
1522046 |
tataacaatggtttagtcatcactcatcac |
1522017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 1512664 - 1512532
Alignment:
| Q |
13 |
catgccaattgttgtaggagcatcactgccaaggtggctgatttaaagaaaacccttcgtgattggaaaagatttaggaggttaggggttaattctactg |
112 |
Q |
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| T |
1512664 |
catgccaactgttgtcgaagcatcactgcgaaggtggccgatttgaaggcaacccttcgtgattggaagcaatttaggaggttagaggctaactctaatg |
1512565 |
T |
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| Q |
113 |
taaatgtctattggaacactcacgagtggtgtt |
145 |
Q |
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| T |
1512564 |
tgaatatcaattggacaagtcatgagtggtgtt |
1512532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 1517876 - 1517783
Alignment:
| Q |
4 |
accactgtccatgccaattgttgtaggagcatcactgccaaggtggctgatttaaagaaaacccttcgtgattggaaaagatttaggaggttag |
97 |
Q |
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| T |
1517876 |
accactgttcatgccaattgttgtcgaagcatagctgcaaaggtggctgatttaaaggcagtccttcatgattggaagcaatttaggaggttag |
1517783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 16643547 - 16643447
Alignment:
| Q |
4 |
accactgtccatgccaattgttgtaggagcatcactgccaaggtggctgatttaaagaaaacccttcgtgattggaaaagatttaggaggttaggggtta |
103 |
Q |
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|||||||| ||||||||||||||| | || |||||||| |||||||||||||||||| | |||| | ||||||||||| |||||||||||||| ||||| |
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| T |
16643547 |
accactgttcatgccaattgttgtcgaagtatcactgcaaaggtggctgatttaaaggcagccctacatgattggaaaaaatttaggaggttagaggtta |
16643448 |
T |
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| Q |
104 |
a |
104 |
Q |
| |
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| T |
16643447 |
a |
16643447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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