View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0931_low_23 (Length: 355)

Name: NF0931_low_23
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0931_low_23
NF0931_low_23
[»] chr5 (1 HSPs)
chr5 (30-343)||(11634935-11635248)
[»] chr3 (13 HSPs)
chr3 (38-153)||(30201152-30201267)
chr3 (88-136)||(30239063-30239111)
chr3 (88-151)||(29649063-29649126)
chr3 (38-144)||(29856825-29856931)
chr3 (197-291)||(29856996-29857090)
chr3 (93-143)||(30227382-30227432)
chr3 (90-143)||(29751882-29751935)
chr3 (102-150)||(30223140-30223188)
chr3 (101-149)||(36333932-36333980)
chr3 (93-127)||(30214753-30214787)
chr3 (114-151)||(29713035-29713072)
chr3 (102-151)||(30230381-30230430)
chr3 (101-149)||(36313855-36313903)
[»] chr6 (2 HSPs)
chr6 (39-142)||(5569421-5569524)
chr6 (39-126)||(5574415-5574502)
[»] chr8 (1 HSPs)
chr8 (90-144)||(1152919-1152973)
[»] chr7 (2 HSPs)
chr7 (88-149)||(16644731-16644792)
chr7 (88-149)||(17619092-17619153)
[»] chr1 (1 HSPs)
chr1 (100-136)||(16955668-16955704)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 30 - 343
Target Start/End: Original strand, 11634935 - 11635248
Alignment:
Q  30 atcataagaaacattcttcagaggctttataccattgatatagtagaaaaggcatgtatagtttgtcctctatggtggaacatatgcaaggatcctctca 129  Q
    ||||||| ||||||||||| ||||||| |||||||||| |||||| |||| ||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  11634935 atcataacaaacattcttcggaggcttgataccattgacatagtaaaaaatgcatgtatagtatgtcctctatggtggagcatatgcaaggatcctctca 11635034  T
Q  130 tgtggcgtaccattcgcatgataggtgattgcagttactttaatgcaaatttgccagagatctgtcattatgctgttgaacgaagctgcggtcatttaga 229  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11635035 tgtggcgtaccattcgcatgataggtgaacgcagttactttaatgcaaatttcccagagatctgtcattatgctgttgaacgaagctgcggtcatttaga 11635134  T
Q  230 agagatttctgttgagtattttgccacagatgagctccttgaattcatagttgagaagtaataataattgataaaagaatcttttttcttgtatatattt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11635135 agagatttctgttgagtattttgccacagatgagctccttgaattcatagttgagaagtaataataattgataaaagaatcttttttcttgtatatattt 11635234  T
Q  330 caattgcttatatt 343  Q
    ||||||| ||||||    
T  11635235 caattgcgtatatt 11635248  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 30201152 - 30201267
Alignment:
Q  38 aaacattcttcagaggctttataccattgatatagtagaaaag-gcatgtatagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcg 136  Q
    |||||||||||| ||||||  ||||||||| || || || ||| ||||||  ||| |||||||||||||||||||| ||||||||||||||||||||||     
T  30201152 aaacattcttcaaaggcttagtaccattgaaattgt-gacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctctcatgtggca 30201250  T
Q  137 taccattcgcatgatag 153  Q
     |||||||  |||||||    
T  30201251 caccattcatatgatag 30201267  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 30239063 - 30239111
Alignment:
Q  88 tagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcg 136  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30239063 tagtatgtcctctatggtggaacatatgcaaggatcctctcatgtggcg 30239111  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 29649063 - 29649126
Alignment:
Q  88 tagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatgat 151  Q
    |||| |||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||    
T  29649063 tagtatgtcctctatcgtggaacatttgtaaggatcctctcatgtggcgtaccattcacatgat 29649126  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 29856825 - 29856931
Alignment:
Q  38 aaacattcttcagaggctttataccattgatatagtagaaaag-gcatgtatagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcg 136  Q
    |||||| ||||| |||||| |||| ||||| || || |||||| ||||||  ||||||||||||||||||| ||||||| || ||||||||| |||||||    
T  29856825 aaacatccttcaaaggcttgatacaattgaaatcgt-gaaaagtgcatgtcaagtttgtcctctatggtgggacatatgtaaagatcctctcctgtggcg 29856923  T
Q  137 taccattc 144  Q
    ||||||||    
T  29856924 taccattc 29856931  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 29856996 - 29857090
Alignment:
Q  197 ttatgctgttgaacgaagctgcggtcatttagaagagatttctgttgagtattttgccacagatgagctccttgaattcatagttgagaagtaat 291  Q
    |||||||||||||||||| ||||||||| | ||||| ||   | ||||||||| ||  || ||||| |||||||||||||||| |||||||||||    
T  29856996 ttatgctgttgaacgaagttgcggtcatcttgaagacatcaatattgagtattctgtaactgatgaactccttgaattcatagctgagaagtaat 29857090  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 30227382 - 30227432
Alignment:
Q  93 tgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccatt 143  Q
    |||||||||| ||||||||| ||||||||||||||||||||||| ||||||    
T  30227382 tgtcctctatagtggaacatttgcaaggatcctctcatgtggcgcaccatt 30227432  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 29751882 - 29751935
Alignment:
Q  90 gtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccatt 143  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||    
T  29751882 gtttgtcctctttggtggaacgtttgcaaggatcctctcatgtggagtaccatt 29751935  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 30223140 - 30223188
Alignment:
Q  102 tggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatga 150  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  30223140 tggtggaacatttgcaaggatcctctcatgtggcgcaccattcacatga 30223188  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 36333980 - 36333932
Alignment:
Q  101 atggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 149  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||    
T  36333980 atggtggaacatttgcaaggatcctctcatgtggcgcactattcgcatg 36333932  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 30214753 - 30214787
Alignment:
Q  93 tgtcctctatggtggaacatatgcaaggatcctct 127  Q
    |||||||||||||||||||| ||||||||||||||    
T  30214753 tgtcctctatggtggaacatttgcaaggatcctct 30214787  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 29713035 - 29713072
Alignment:
Q  114 tgcaaggatcctctcatgtggcgtaccattcgcatgat 151  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  29713035 tgcaaggatcctctaatgtggcgtaccattcacatgat 29713072  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 30230381 - 30230430
Alignment:
Q  102 tggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatgat 151  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||||| ||||||    
T  30230381 tggtggagcatttgcaaggatcctcgcatgtggcgcaccattcacatgat 30230430  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 36313903 - 36313855
Alignment:
Q  101 atggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 149  Q
    ||||| ||| || ||||||||||||||||||||||| || |||||||||    
T  36313903 atggttgaagatttgcaaggatcctctcatgtggcgcactattcgcatg 36313855  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 5569524 - 5569421
Alignment:
Q  39 aacattcttcagaggctttataccattgatatagtagaaaaggcatgtatagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgta 138  Q
    ||||| ||||| |||||| |||| |||||| |||||  ||  ||||||  ||| |||||||||||||||||||| ||||||||||||||  |||||||||    
T  5569524 aacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctcttgtgtggcgta 5569425  T
Q  139 ccat 142  Q
    ||||    
T  5569424 ccat 5569421  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 5574502 - 5574415
Alignment:
Q  39 aacattcttcagaggctttataccattgatatagtagaaaaggcatgtatagtttgtcctctatggtggaacatatgcaaggatcctc 126  Q
    ||||| ||||| |||||| |||| |||||| |||||  ||  ||||||  ||| |||||||||||||||||||| |||||||||||||    
T  5574502 aacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctc 5574415  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 1152973 - 1152919
Alignment:
Q  90 gtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattc 144  Q
    ||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||    
T  1152973 gtttgtcctctgtggtggcacatttgcaaggatcctctaatgtggcgtaccattc 1152919  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 16644792 - 16644731
Alignment:
Q  88 tagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 149  Q
    |||| ||| |||||||||||||||| |||||||| |||||||||||||| ||||||| ||||    
T  16644792 tagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatg 16644731  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 17619153 - 17619092
Alignment:
Q  88 tagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 149  Q
    |||| ||| |||||||||||||||| |||||||| |||||||||||||| ||||||| ||||    
T  17619153 tagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatg 17619092  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 16955704 - 16955668
Alignment:
Q  100 tatggtggaacatatgcaaggatcctctcatgtggcg 136  Q
    |||||||||| || |||||||||||||||||||||||    
T  16955704 tatggtggaatatttgcaaggatcctctcatgtggcg 16955668  T

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