View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_3 (Length: 531)
Name: NF0931_low_3
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 58 - 370
Target Start/End: Original strand, 40697173 - 40697482
Alignment:
| Q |
58 |
aaagggaaaaatttattaactagactactctaagcacaaggtgtgccaagaacagatcgagataggacaacagacaaatagttacaacagttcaaaacca |
157 |
Q |
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| T |
40697173 |
aaagagaaaaaattattaacaaggctactctgaacacaaggcgtgccaagaatagatcgagataagagaaca-acagatggttacaacaattctaaaaca |
40697271 |
T |
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| Q |
158 |
attatagattacactaaattgtgacaatcatctccttactaaagaagataatattannnnnnnnaaagggaaaaatttattaactagactactctaagca |
257 |
Q |
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| T |
40697272 |
attatagattacactaaattgtgacaatcagctccttactaaagaagataatattatttttt--aaagggaaaaatttattaacaagactactctaagca |
40697369 |
T |
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| Q |
258 |
caaggtgtgccaagaacagatcgagataggacaacagacaaatagttacaacagttcaaaaccaattatagattacactaaattgtgacaatcagctcca |
357 |
Q |
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| T |
40697370 |
caaggtgtgccaagaacagatcaagataggacaacagacaaatagttacaacagttcaaaaccaattatagattacactaaattgtgacaatcagctcca |
40697469 |
T |
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| Q |
358 |
tactgaagagaag |
370 |
Q |
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| T |
40697470 |
tactgaagagaag |
40697482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 40697279 - 40697478
Alignment:
| Q |
1 |
attacactaaattgtgacaatcatctccttactaaagaagataatattannnnnnnnaaagggaaaaatttattaactagactactctaagcacaaggtg |
100 |
Q |
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| T |
40697279 |
attacactaaattgtgacaatcagctccttactaaagaagataatatta--ttttttaaagggaaaaatttattaacaagactactctaagcacaaggtg |
40697376 |
T |
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| Q |
101 |
tgccaagaacagatcgagataggacaacagacaaatagttacaacagttcaaaaccaattatagattacactaaattgtgacaatcatctccttactaaa |
200 |
Q |
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| T |
40697377 |
tgccaagaacagatcaagataggacaacagacaaatagttacaacagttcaaaaccaattatagattacactaaattgtgacaatcagctccatactgaa |
40697476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 434 - 531
Target Start/End: Original strand, 40697549 - 40697644
Alignment:
| Q |
434 |
gagtgatatcacaaatccttatatcaaggaggagtactccaagaagtaaagataatatatatatacacttagaaataaatcatataattaaaatatga |
531 |
Q |
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| T |
40697549 |
gagtgatatcacaaatccttatatcaaggaggagtactccaagaagtaaagata--atatatatacacttagaaataaatcatataattaacatatga |
40697644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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