View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_32 (Length: 307)
Name: NF0931_low_32
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 85 - 293
Target Start/End: Original strand, 22941968 - 22942183
Alignment:
| Q |
85 |
aagttttctaatgtaaaattgcttttttggttgattaatatgtgcccttagaacacaagttaacatgacnnnnnnn--------gacaaaaattgtctac |
176 |
Q |
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| T |
22941968 |
aagttttttaatgtaaaattgttcttttggttg-ttaacatgtgtccttagaacacaagttaacatgacaaaaaaaaaaaaaaagacaaaaattgtctac |
22942066 |
T |
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| Q |
177 |
ttttaatcgctgatttgcctaagccagtgattttaggtgcttaaaattccatgtaaagggatctaagatttcatttaatttaattattttatatatgatc |
276 |
Q |
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| T |
22942067 |
ttttaatcgctgatttgcctaagccagtgattttaggtgcttaaaattccatgtaaagggatctaagatttcatttcatttaattattttatatatgatc |
22942166 |
T |
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| Q |
277 |
aaatatgttaactcatt |
293 |
Q |
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| T |
22942167 |
aaatatgttaactcatt |
22942183 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 3787528 - 3787596
Alignment:
| Q |
87 |
gttttctaatgtaaaattgcttttttgg--ttgattaatatgtgcccttagaacacaagttaacatgac |
153 |
Q |
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| T |
3787528 |
gttttctaatgtaaaattgctctttttgaattcattaacatgtgcccttaggacataagttaacatgac |
3787596 |
T |
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