View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_39 (Length: 297)
Name: NF0931_low_39
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 1522218 - 1522507
Alignment:
| Q |
1 |
aacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaa |
100 |
Q |
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| T |
1522218 |
aacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaa |
1522317 |
T |
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| Q |
101 |
atctcgaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctcaaacaaagat |
200 |
Q |
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| T |
1522318 |
atctcgaaatataccacctttaatgaggtcctcaagcacatcttgctcctttttttctgtgaaattatctttcattccataccatgtctcaaacaaagat |
1522417 |
T |
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| Q |
201 |
atggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgannnnnnnctgaccaaggatcaccaaagtattcgtctgtgctg |
290 |
Q |
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| T |
1522418 |
atggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgatttttttctgaccaaggatcaccaaagtattcgtctgtgctg |
1522507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 1517855 - 1518095
Alignment:
| Q |
1 |
aacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaa |
100 |
Q |
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||||||||||||| |||||||| || ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| | || | |||||| |
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| T |
1517855 |
aacaattggcatgaacagtggtcacttccctaaagtctttactatcttgacaaaatccactaaaatagagagtatccaagaacctaacatttagtcccaa |
1517954 |
T |
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| Q |
101 |
atctcgaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctcaaacaaagat |
200 |
Q |
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| T |
1517955 |
atgtccaattataccacctccaatgaggtcaagaagcacatcttgctccttttttcctgtggaattatctttcattccattccatatttcaaacaaagat |
1518054 |
T |
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| Q |
201 |
atggtcttgttgtttgatctcacaaagaaaaatccagtatt |
241 |
Q |
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| T |
1518055 |
atggtcttgttattcgacctcgcaaagtaaaatccagtatt |
1518095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 21 - 289
Target Start/End: Original strand, 1512672 - 1512940
Alignment:
| Q |
21 |
gttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccacctt |
120 |
Q |
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||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| || |||| || |||||||||| ||| |
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| T |
1512672 |
gttactgccctaacatctttactgtcttggcaaaatccactaaaataaagggtatccaagaatctaaccttgagccctaaatgtccaaatataccagctt |
1512771 |
T |
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| Q |
121 |
taatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatct |
220 |
Q |
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| T |
1512772 |
caatgaggtcaataagcacatcttgctcctttttacctgtggaattgtctttctttccataccatgtttcaaacaaggatatggtctttttatttgacct |
1512871 |
T |
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| Q |
221 |
cacaaagaaaaatccagtattgactcgannnnnnnctgaccaaggatcaccaaagtattcgtctgtgct |
289 |
Q |
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| T |
1512872 |
cacaaagaaaaatccagtattgatcaaatgtttttctgaccaaggatcaccaaggtatacgtctgtgct |
1512940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 16643526 - 16643768
Alignment:
| Q |
1 |
aacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaa |
100 |
Q |
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||||||||||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| |||||| |
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| T |
16643526 |
aacaattggcatgaacagtggtcactgccctaaaatctttactatcttgacaaaaaccactaaaatagagagtatccaagaacctaaccttgagtcccaa |
16643625 |
T |
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| Q |
101 |
atctcgaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctcaaacaaagat |
200 |
Q |
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| || || ||||||| | |||||||||| ||| ||||||||||| ||||| |||| |||||| ||||||||||||| |||||||||||| |
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| T |
16643626 |
gtgtccaattataccatgtctaatgaggtcaagaagaacatcttgctctttttttcctgtggaattgtctttctttccataccatgtttcaaacaaagat |
16643725 |
T |
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| Q |
201 |
atggtcttgttgtttgatctcacaaagaaaaatccagtattga |
243 |
Q |
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||||||||||| || || || |||||| ||||||| ||||||| |
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| T |
16643726 |
atggtcttgttattggaccttacaaagtaaaatccggtattga |
16643768 |
T |
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