View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0931_low_4 (Length: 516)

Name: NF0931_low_4
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0931_low_4
NF0931_low_4
[»] chr2 (4 HSPs)
chr2 (86-391)||(27333477-27333783)
chr2 (136-324)||(18206099-18206288)
chr2 (272-326)||(31118503-31118557)
chr2 (101-206)||(31118632-31118740)
[»] chr7 (3 HSPs)
chr7 (226-391)||(12625886-12626051)
chr7 (213-295)||(21064014-21064096)
chr7 (283-352)||(38456066-38456135)
[»] chr3 (1 HSPs)
chr3 (108-315)||(19196251-19196459)
[»] chr1 (6 HSPs)
chr1 (263-357)||(43784369-43784463)
chr1 (109-221)||(28540462-28540577)
chr1 (104-221)||(33298303-33298422)
chr1 (104-224)||(48997487-48997610)
chr1 (172-353)||(50908128-50908318)
chr1 (283-357)||(44489066-44489140)
[»] chr6 (2 HSPs)
chr6 (223-317)||(19223198-19223292)
chr6 (272-353)||(6287286-6287367)
[»] scaffold0408 (1 HSPs)
scaffold0408 (272-353)||(5911-5992)
[»] chr8 (3 HSPs)
chr8 (272-353)||(14095569-14095650)
chr8 (104-221)||(10529736-10529856)
chr8 (172-231)||(37229411-37229470)
[»] chr4 (4 HSPs)
chr4 (104-260)||(39463839-39463998)
chr4 (108-221)||(849741-849857)
chr4 (272-353)||(42562161-42562242)
chr4 (104-159)||(38650317-38650371)
[»] chr5 (2 HSPs)
chr5 (172-353)||(2741451-2741635)
chr5 (104-221)||(13272531-13272651)
[»] scaffold1212 (2 HSPs)
scaffold1212 (289-361)||(753-825)
scaffold1212 (172-224)||(892-944)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 86 - 391
Target Start/End: Original strand, 27333477 - 27333783
Alignment:
Q  86 agagggaaagggatacactacgccctcctttggctagtcgagggagaggagggcaagagacttgctagggttgacgctgctggg-cctcaacgtcacaga 184  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  27333477 agagggaaagggatacactacgccatcctttggctagtcgagggagaggagggcacgagacttgctagggttgacgctgctggggcctcaacgtcacaga 27333576  T
Q  185 tgggtccatcccacacggtggatccgacacaatatcaacaacattatgaggagtagcaccaggcgcagaatcagacttattatgaggagcctcaacaata 284  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27333577 tgggtccatcccacacggtggacccgacacaatatcagcaacattatgaggagtagcaccaggcgcagaatcagacttattatgaggagcctcaacaata 27333676  T
Q  285 tcattttgatgtggatcaacaacatcagtatgaagatcatcaatatcagcctgatattgagcaggagcaacctaataaggagcattctcaacagaaggag 384  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  27333677 tcattttgacgtggatcaacaacattagtatgaagatcatcaatatcagcctgatattgagcaggagcaacctaataaggagcatcctcagcagaaggag 27333776  T
Q  385 ggtgggg 391  Q
    |||||||    
T  27333777 ggtgggg 27333783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 18206288 - 18206099
Alignment:
Q  136 gggcaagagacttgctagggttgacgctgctggg-cctcaacgtcacagatgggtccatcccacacggtggatccgacacaatatcaacaacattatgag 234  Q
    ||||| |||||||| ||||||||| | ||| ||| ||| | | ||||||| ||||| |||||| ||||||||||||||||| ||||| || |||||| ||    
T  18206288 gggcacgagacttggtagggttgatgttgcgggggccttatcatcacagacgggtcgatcccatacggtggatccgacacattatcagcagcattatcag 18206189  T
Q  235 gagtagcaccaggcgcagaatcagacttattatgaggagcctcaacaatatcattttgatgtggatcaacaacatcagtatgaagatcat 324  Q
    ||||| || |||||||| |||||| |||||||| ||||||||||||| ||||||||||||| | |||| || ||| ||||||| ||||||    
T  18206188 gagtatcagcaggcgcaaaatcagccttattataaggagcctcaacagtatcattttgatgcgtatcagcagcattagtatgaggatcat 18206099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 31118557 - 31118503
Alignment:
Q  272 agcctcaacaatatcattttgatgtggatcaacaacatcagtatgaagatcatca 326  Q
    |||||||||| ||||||||||||||  |||| || ||||||||||| ||||||||    
T  31118557 agcctcaacattatcattttgatgtctatcagcagcatcagtatgaggatcatca 31118503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 31118740 - 31118632
Alignment:
Q  101 cactacgccctcctttggctagtcgagggagag--gagggcaagagacttgctagggttgacgctgctgg-gcctcaacgtcacagatgggtccatccca 197  Q
    |||||||||||||| ||||| ||||||||||||  | ||||| ||||||| |||| ||||| | ||| || |  ||||| ||||||| ||||||||||||    
T  31118740 cactacgccctcctatggctggtcgagggagaggtgggggcacgagactttctagagttgatgttgcaggagggtcaacatcacagaagggtccatccca 31118641  T
Q  198 cacggtgga 206  Q
     | ||||||    
T  31118640 gatggtgga 31118632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 226 - 391
Target Start/End: Original strand, 12625886 - 12626051
Alignment:
Q  226 cattatgaggagtagcaccaggcgcagaatcagacttattatgaggagcctcaacaatatcattttgatgtggatcaacaacatcagtatgaagatcatc 325  Q
    |||||||||||||| || |||||||| |||||| ||||||||||||||| ||| || ||||||||||||| | |||| |||||||||||||| |||||||    
T  12625886 cattatgaggagtatcagcaggcgcaaaatcaggcttattatgaggagcttcaccagtatcattttgatgcgtatcagcaacatcagtatgaggatcatc 12625985  T
Q  326 aatatcagcctgatattgagcaggagcaacctaataaggagcattctcaacagaaggagggtgggg 391  Q
    |||||||| ||||||||||||| ||||| ||| |||  |||||  |||| ||| |||||| |||||    
T  12625986 aatatcagtctgatattgagcaagagcagcctgatattgagcagcctcagcagcaggaggatgggg 12626051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 21064096 - 21064014
Alignment:
Q  213 acaatatcaacaacattatgaggagtagcaccaggcgcagaatcagacttattatgaggagcctcaacaatatcattttgatg 295  Q
    ||||||||||||||||||| ||||||| || |||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  21064096 acaatatcaacaacattatcaggagtatcagcaggcgtagaatcaaccttattatgaggagcctcaacaatatcattttgatg 21064014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 38456066 - 38456135
Alignment:
Q  283 tatcattttgatgtggatcaacaacatcagtatgaagatcatcaatatcagcctgatattgagcaggagc 352  Q
    ||||| ||||||| | |||| ||||||| |||||| ||||||||  | ||||||||||||||||||||||    
T  38456066 tatcagtttgatgcgtatcagcaacatcggtatgaggatcatcataagcagcctgatattgagcaggagc 38456135  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 108 - 315
Target Start/End: Original strand, 19196251 - 19196459
Alignment:
Q  108 ccctcctttggctagtcgagggagaggagggcaagagacttgctagggttgacgctgctggg-cctcaacgtcacagatgggtccatcccacacggtgga 206  Q
    ||||||||||| | ||||||||||| | ||||| |||||||| ||| ||| | | ||| ||| ||||| | ||||||||||||| |||||| | | || |    
T  19196251 ccctcctttggatggtcgagggagatgggggcacgagacttggtagtgttaatgttgcgggggcctcatcatcacagatgggtcgatcccagatgttgca 19196350  T
Q  207 tccgacacaatatcaacaacattatgaggagtagcaccaggcgcagaatcagacttattatgaggagcctcaacaatatcattttgatgtggatcaacaa 306  Q
     | ||| || |||||||||| |||||| ||||| || ||||| || |||||| ||||||||||  |||||||||||||||||||| |||   |||| |||    
T  19196351 cctgacgcagtatcaacaacgttatgaagagtatcagcaggcacaaaatcaggcttattatgaaaagcctcaacaatatcattttaatgcatatcagcaa 19196450  T
Q  307 catcagtat 315  Q
    |||||||||    
T  19196451 catcagtat 19196459  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 357
Target Start/End: Complemental strand, 43784463 - 43784369
Alignment:
Q  263 attatgaggagcctcaacaatatcattttgatgtggatcaacaacatcagtatgaagatcatcaatatcagcctgatattgagcaggagcaacct 357  Q
    ||||||||||| ||||||| ||||||||| ||||| |||||||||||||||||||  |||||||  | |||||||||||||||||| ||||||||    
T  43784463 attatgaggagtctcaacagtatcattttaatgtgtatcaacaacatcagtatgagaatcatcaggagcagcctgatattgagcagaagcaacct 43784369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 28540577 - 28540462
Alignment:
Q  109 cctcctttggctagtcgagggagaggagg--gcaagagacttgctagggttgacgctgct-gggcctcaacgtcacagatgggtccatcccacacggtgg 205  Q
    |||||||| ||| ||||||||||||| ||  ||| |||||||||||| ||||| |||||  |||  |||| |||||||| |||||||||||| ||||||     
T  28540577 cctcctttagctggtcgagggagaggtggaggcacgagacttgctagagttgatgctgcacgggggtcaatgtcacagacgggtccatcccaaacggtga 28540478  T
Q  206 atccgacacaatatca 221  Q
    | ||||||||||||||    
T  28540477 acccgacacaatatca 28540462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 33298422 - 33298303
Alignment:
Q  104 tacgccctcctttggctagtcgagggagaggagggcaa--gagacttgctagggttgacgctgctgggcctcaacgtcacagatgggtccatcccacacg 201  Q
    ||||||||||| ||| | ||||||||||||| |||  |  |||||||||||| ||||| ||||| |||  |||| |||| ||| |||||||||||| |||    
T  33298422 tacgccctcctatggttggtcgagggagaggtgggggaacgagacttgctagagttgatgctgcagggggtcaaggtcaaagacgggtccatcccagacg 33298323  T
Q  202 gtggatccgacacaatatca 221  Q
    ||| | ||||||||| ||||    
T  33298322 gtgaacccgacacaacatca 33298303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 48997487 - 48997610
Alignment:
Q  104 tacgccctcctttggctagtcgagggagaggagggcaa--gagacttgctagggttgacgctgctgggcc-tcaacgtcacagatgggtccatcccacac 200  Q
    ||||||||| | ||| | ||||||||||||| |||  |  |||||||||||| ||||| ||||| |||   ||||||||||||| |||||||||||| ||    
T  48997487 tacgccctcatatggttggtcgagggagaggtgggggaacgagacttgctagagttgatgctgcaggggggtcaacgtcacagacgggtccatcccagac 48997586  T
Q  201 ggtggatccgacacaatatcaaca 224  Q
    |||| | |||||||| ||||||||    
T  48997587 ggtgaacccgacacagtatcaaca 48997610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 353
Target Start/End: Original strand, 50908128 - 50908318
Alignment:
Q  172 tcaacgtcacagatgggtccatcccacacggtggatccgacacaatatcaacaacattatgaggagtagcaccaggcgcagaatcagacttattatg--- 268  Q
    ||||||||||||| |||||||||||| |||||| |||||||||| ||||| ||  ||||| | | |||  | ||||||||| ||||| | ||| ||        
T  50908128 tcaacgtcacagacgggtccatcccagacggtgaatccgacacagtatcagcaggattatcaagtgtatgagcaggcgcaggatcaggcctatcattttc 50908227  T
Q  269 aggagcctcaacaa------tatcattttgatgtggatcaacaacatcagtatgaagatcatcaatatcagcctgatattgagcaggagca 353  Q
    ||||||||||||        ||||| ||||||| | |||| || ||||||||||| ||||||||  | ||||||| |||||||||||||||    
T  50908228 aggagcctcaacctcagttgtatcaatttgatgcgtatcagcagcatcagtatgaggatcatcatgagcagcctggtattgagcaggagca 50908318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 44489066 - 44489140
Alignment:
Q  283 tatcattttgatgtggatcaacaacatcagtatgaagatcatcaatatcagcctgatattgagcaggagcaacct 357  Q
    ||||| ||||||| | |||| || ||||||||||||||||||||  |  |||||| |||||| ||||||||||||    
T  44489066 tatcagtttgatgcgtatcagcagcatcagtatgaagatcatcatgagtagcctggtattgaccaggagcaacct 44489140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 19223198 - 19223292
Alignment:
Q  223 caacattatgaggagtagcaccaggcgcagaatcagacttattatgaggagcctcaacaatatcattttgatgtggatcaacaacatcagtatga 317  Q
    ||||||||| | |||||  | ||||| || |||||| |||||||||||||||||||||||||||||||||||| | |||| || |||||||||||    
T  19223198 caacattatcaagagtattaacaggcacataatcagccttattatgaggagcctcaacaatatcattttgatgcgtatcagcagcatcagtatga 19223292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 6287367 - 6287286
Alignment:
Q  272 agcctcaacaatatcattttgatgtggatcaacaacatcagtatgaagatcatcaatatcagcctgatattgagcaggagca 353  Q
    ||||||| || ||||| ||||||| | |||| ||||||||| |||| ||||||||  | ||||||| |||||||||||||||    
T  6287367 agcctcaccagtatcagtttgatgcgtatcagcaacatcagaatgaggatcatcatgagcagcctggtattgagcaggagca 6287286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 5911 - 5992
Alignment:
Q  272 agcctcaacaatatcattttgatgtggatcaacaacatcagtatgaagatcatcaatatcagcctgatattgagcaggagca 353  Q
    ||||||| || ||||| ||||||| | ||||||||||||||||||| ||||||||  | ||||||| |||||||||||||||    
T  5911 agcctcaccagtatcagtttgatgcgtatcaacaacatcagtatgaggatcatcatgagcagcctggtattgagcaggagca 5992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 14095569 - 14095650
Alignment:
Q  272 agcctcaacaatatcattttgatgtggatcaacaacatcagtatgaagatcatcaatatcagcctgatattgagcaggagca 353  Q
    ||||||| || ||||| ||||||| | ||||||||||||||||||| ||||||||  | ||||||| |||||||||||||||    
T  14095569 agcctcaccagtatcagtttgatgcgtatcaacaacatcagtatgaggatcatcatgagcagcctggtattgagcaggagca 14095650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 10529736 - 10529856
Alignment:
Q  104 tacgccctcctttggctagtcgagggagaggagggcaa--gagacttgctagggttgacgctgctgggcc-tcaacgtcacagatgggtccatcccacac 200  Q
    ||||||||||| ||| | ||||||||||||| |||  |  |||||||||||| ||||| ||||| |||   | ||||||||||| |||||||||||| ||    
T  10529736 tacgccctcctatggttggtcgagggagaggtgggggaacgagacttgctagagttgatgctgcaggggggttaacgtcacagacgggtccatcccagac 10529835  T
Q  201 ggtggatccgacacaatatca 221  Q
    |||| | |||||||| |||||    
T  10529836 ggtgcacccgacacagtatca 10529856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 37229470 - 37229411
Alignment:
Q  172 tcaacgtcacagatgggtccatcccacacggtggatccgacacaatatcaacaacattat 231  Q
    ||||||||||||| |||||||||||| |||||| |  |||||||||| |||||| |||||    
T  37229470 tcaacgtcacagacgggtccatcccagacggtgaactcgacacaataccaacaagattat 37229411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 260
Target Start/End: Original strand, 39463839 - 39463998
Alignment:
Q  104 tacgccctcctttggctagtcgagggagaggagg--gcaagagacttgctagggttgacgctgctgggcc-tcaacgtcacagatgggtccatcccacac 200  Q
    ||||||||||| ||||| ||||||||||||| ||  | | |||||||||||| ||||| ||||| |||   ||||||||||||| ||||||||||||  |    
T  39463839 tacgccctcctatggctggtcgagggagaggtggaggaacgagacttgctagagttgatgctgcaggggggtcaacgtcacagacgggtccatcccaggc 39463938  T
Q  201 ggtggatccgacacaatatcaacaacattatgaggagtagcaccaggcgcagaatcagac 260  Q
     ||| | |||||||| ||||| ||  ||||| ||| |||  | ||||||||| |||||||    
T  39463939 agtgaacccgacacagtatcagcaggattatcaggtgtatgagcaggcgcaggatcagac 39463998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 849857 - 849741
Alignment:
Q  108 ccctcctttggctagtcgagggagaggagggcaa--gagacttgctagggttgacgctgctgggcc-tcaacgtcacagatgggtccatcccacacggtg 204  Q
    ||||||| ||||  ||||||||||||| |||  |  |||||||||||| ||||| ||||| |||   |||||||| |||| |||||||||||| ||||||    
T  849857 ccctcctatggccggtcgagggagaggtgggggaacgagacttgctagagttgatgctgcaggggggtcaacgtcgcagacgggtccatcccagacggtg 849758  T
Q  205 gatccgacacaatatca 221  Q
     | ||||||||||||||    
T  849757 aacccgacacaatatca 849741  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 42562242 - 42562161
Alignment:
Q  272 agcctcaacaatatcattttgatgtggatcaacaacatcagtatgaagatcatcaatatcagcctgatattgagcaggagca 353  Q
    ||||||| |||||||| ||||||| | |||| |||||||||||||| ||||||||  |  |||||  |||||||||||||||    
T  42562242 agcctcaccaatatcagtttgatgcgtatcagcaacatcagtatgaggatcatcatgagtagcctagtattgagcaggagca 42562161  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 38650317 - 38650371
Alignment:
Q  104 tacgccctcctttggctagtcgagggagaggagggcaagagacttgctagggttga 159  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||  |||||||||    
T  38650317 tacgccctcctttggctggtcgagggagagg-gggcacgagacttagtagggttga 38650371  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 353
Target Start/End: Original strand, 2741451 - 2741635
Alignment:
Q  172 tcaacgtcacagatgggtccatcccacacggtggatccgacacaatatcaacaacattatgaggagtagcaccaggcgcagaatcagac---ttattatg 268  Q
    ||||||||||||| |||||||||||| |||||| | |||||||| ||||| ||  ||||| ||| |||  | ||||||||| ||||  |   | ||| |     
T  2741451 tcaacgtcacagacgggtccatcccagacggtgaacccgacacagtatcagcaggattatcaggtgtatgagcaggcgcaggatcaagcctatcattttc 2741550  T
Q  269 aggagcctcaacaatatcattttgatgtggatcaacaacatcagtatgaagatcatcaatatcagcctgatattgagcaggagca 353  Q
    ||||||||||    ||||| ||||||||| ||||  | ||||| ||||| ||||||||  | |||| || |||||||||||||||    
T  2741551 aggagcctcagtcgtatcaatttgatgtgtatcagtagcatcaatatgaggatcatcatgagcagcatggtattgagcaggagca 2741635  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 13272531 - 13272651
Alignment:
Q  104 tacgccctcctttggctagtcgagggagaggagggcaa--gagacttgctagggttgacgctgctgggcc-tcaacgtcacagatgggtccatcccacac 200  Q
    ||||||||||| ||| | ||||||||||||| |||  |  |||||||||||| ||||| ||||| |||   ||||||||||||| || ||||||||| ||    
T  13272531 tacgccctcctatggttggtcgagggagaggtgggggaacgagacttgctagagttgatgctgcaggggggtcaacgtcacagacggctccatcccagac 13272630  T
Q  201 ggtggatccgacacaatatca 221  Q
    |||| | |||| ||| |||||    
T  13272631 ggtgaacccgaaacagtatca 13272651  T

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Target: scaffold1212 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 825 - 753
Alignment:
Q  289 tttgatgtggatcaacaacatcagtatgaagatcatcaatatcagcctgatattgagcaggagcaacctaata 361  Q
    ||||||| | |||| |||||||||||||| ||||||||  | |||| || ||||||| ||||||| |||||||    
T  825 tttgatgggtatcagcaacatcagtatgaggatcatcatgaccagcttggtattgagaaggagcagcctaata 753  T

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Target: scaffold1212; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 944 - 892
Alignment:
Q  172 tcaacgtcacagatgggtccatcccacacggtggatccgacacaatatcaaca 224  Q
    ||||| ||||||| |||||||||||| ||| || | |||||||||||||||||    
T  944 tcaacatcacagacgggtccatcccagacgctgaacccgacacaatatcaaca 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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