View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_40 (Length: 289)
Name: NF0931_low_40
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 47070233 - 47070117
Alignment:
| Q |
92 |
tttcttaacagtgctaacggtgttaacataaaggggaggtaagtgttttttctaaactagaagggtgtttgtgttgtttagtgtaacttcgtgggaggt- |
190 |
Q |
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| T |
47070233 |
tttcttaacagtgctaacggtgttaacataaaggggaggtaagtgttttttctaaactagaagggtgtttgtgttgtttagtgtaacttcgtgggaggtc |
47070134 |
T |
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| Q |
191 |
aatgcaatttgccctat |
207 |
Q |
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| T |
47070133 |
aatgcaatttgccctat |
47070117 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 14745405 - 14745502
Alignment:
| Q |
106 |
taacggtgttaacataaaggggaggtaagtg--ttttttctaaactagaagggtgtttgtgttgtttagtgtaacttcgtgggagg-taatgcaattt |
200 |
Q |
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| T |
14745405 |
taacggtgttcacttaaaggggaagtaagtgttttttttataaaatagaggggtgttagtgttctttagtgaaacctcaagggaggttaatgcaattt |
14745502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 36074475 - 36074539
Alignment:
| Q |
106 |
taacggtgttaacataaaggggaggtaagtgttttttctaaactagaagggtgtttgtgttgttta |
171 |
Q |
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| T |
36074475 |
taacggtgttaaaataa-ggggaggtttgtgttttttgaaaactagaggggtatttgtgttgttta |
36074539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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