View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0931_low_47 (Length: 264)
Name: NF0931_low_47
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_47 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 43182701 - 43182931
Alignment:
| Q |
30 |
aaatattcttgtggatatctca--gacatcgagttgcttcgagattttgaatgtgttgtaaacttgttgaacggtttaagtgatccctacaattttgtta |
127 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43182701 |
aaatattcttgtggatatctcaaagacatcgagttgcttcgagattttgaatgtgttgtaaacttgttgaatggtttaagtgatccctacaattttgtta |
43182800 |
T |
|
| Q |
128 |
aatcacaaattctacgtatggaactttggcactgctaatgatgatgccaaaattcttttcaactctactgaaagaccttggttccctacacagagtggaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43182801 |
aatcacaaattctacgtatggaactttggcactgctaatgatgatgccaaaattcttttcaactctactgaaagaccttggttccctacacagagtggaa |
43182900 |
T |
|
| Q |
228 |
gatcaattgttatggtcattgcaataatggaaa |
260 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
43182901 |
gatcaa--gttatggtcattgcaataatggaaa |
43182931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University