View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_48 (Length: 258)
Name: NF0931_low_48
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 37 - 243
Target Start/End: Original strand, 37218179 - 37218402
Alignment:
| Q |
37 |
agataaacatctcttcgttatatttattaccccacatatacttggcttgcacggtaacactatatactccagattgctccacaacaacttgc--nnnnnn |
134 |
Q |
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| T |
37218179 |
agataaacatctcttcgttatatttattaccccacatatacttggcttgcacggtaacaatatatactccagattgctccagaacaacttgcaaaaaaaa |
37218278 |
T |
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| Q |
135 |
ntactccacatacttaaaaaggtcaacact---------------atatattctgtnnnnnnngaaggtcaacactgcagagacctccaaaaatcctata |
219 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37218279 |
atactccacatacttaaaaaggtcaacactgcagaaaaaagaaggtcatattctgtaaaaaaagaaggtcaacactgcagagacctccaaaaatcctata |
37218378 |
T |
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| Q |
220 |
ccaattaagcttatttttcatttc |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
37218379 |
ccaattaagcttatttttcatttc |
37218402 |
T |
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