View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_49 (Length: 258)
Name: NF0931_low_49
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 2862386 - 2862140
Alignment:
| Q |
1 |
caatcccagcaaacaaaagcaacacccctaatatgccaataggaaactgacccaaaattcttccaaaagagttcccaaaaaccaaagcaatcaacaattt |
100 |
Q |
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| T |
2862386 |
caatcccagcaaacaaaagcaacacccctaatatgccaataggaaactgacccaaaattcttccaaaagagttcccaaaaaccaaagcaatcaacaattt |
2862287 |
T |
|
| Q |
101 |
accaaccccaagaaaaacaacagaagcaccactcctacctccaaacctatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaac |
200 |
Q |
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| T |
2862286 |
accaaccccaagaaaaacaacagaagcaccactcctacctccaaacctatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaac |
2862187 |
T |
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| Q |
201 |
caacaaccaacaaaattcatcactccaacactcactgaaaccttcat |
247 |
Q |
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| T |
2862186 |
caacaaccaacaaaattcatcactccaacactcactgaaaccttcat |
2862140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 1875793 - 1875682
Alignment:
| Q |
129 |
ccactcctacctccaaacctatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaaccaacaaccaacaaaattcatcactccaa |
228 |
Q |
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| T |
1875793 |
ccactccttccaccaaatttatactgtcctgctagtccaccagcaccatggcaagatggcattgcaccaaaccaacaaccaaccaaattcatcaacccaa |
1875694 |
T |
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| Q |
229 |
cactcactgaaa |
240 |
Q |
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| T |
1875693 |
ctgtcactgaaa |
1875682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 1808189 - 1808078
Alignment:
| Q |
129 |
ccactcctacctccaaacctatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaaccaacaaccaacaaaattcatcactccaa |
228 |
Q |
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|||||||| |||||||| ||||||| || || | ||| ||||| ||||| ||| |||| ||||||||||||| ||||||| |||||||| | ||||| |
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| T |
1808189 |
ccactccttcctccaaatttatactgtcctgctagtcctccagcaccatgacaagttggcacagcaccaaaccaagaaccaactaaattcattagtccaa |
1808090 |
T |
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| Q |
229 |
cactcactgaaa |
240 |
Q |
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| ||||||||| |
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| T |
1808089 |
ctgtcactgaaa |
1808078 |
T |
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