View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0931_low_53 (Length: 251)
Name: NF0931_low_53
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_53 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 8531450 - 8531671
Alignment:
| Q |
30 |
ttaaagtgcagtaggaattgttcaacaatgatattgtatgttagggaatcattatgaatagcattgagggaaaagttcgacaatgcctatgtatacattt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8531450 |
ttaaagtgcagtaggaattgttcaacaatgatactgtatgttagggaatcattatgaatagcattgagggaaaagttcgacaatgcctatgtatacattt |
8531549 |
T |
|
| Q |
130 |
caatatatgaaacttgaaaaacatcaatttgtgtctttctagttataatattaaatgataatccttccaaataacatgacaatccatccaaatgaaaata |
229 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8531550 |
caatgtatgaaacttgaagaacatcaatttgtgtctttccagttataatattaaataataatccttccaaataacatgacaatccatccaaatgaaaata |
8531649 |
T |
|
| Q |
230 |
tcaaaattctaatacaagataa |
251 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8531650 |
tcaaaattctaatacaagataa |
8531671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 28697601 - 28697539
Alignment:
| Q |
189 |
aatccttccaaataacatgacaatccatccaaatgaaaatatcaaaattctaatacaagataa |
251 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
28697601 |
aatccttacaaataacatgacaatccatcgaaatcaaaatatcaaaattctaatacaaaataa |
28697539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 28697740 - 28697692
Alignment:
| Q |
41 |
taggaattgttcaacaatgatattgtatgttagggaatcattatgaata |
89 |
Q |
| |
|
||||||| |||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
28697740 |
taggaatagttccacaatgctattgtatattagggaatcattatgaata |
28697692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 5154709 - 5154595
Alignment:
| Q |
137 |
tgaaacttgaaaaacatcaatttgtgtctttctagttataatattaaatgataatccttccaaataacatgacaatccatccaaatgaaaatatcaaaat |
236 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5154709 |
tgaaacttgaagaacatcaatttgtgtctttccaattataatattaaataataatccttccaaataacatgacaatccatccaaatgaaaatatcaaaat |
5154610 |
T |
|
| Q |
237 |
tctaatacaagataa |
251 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5154609 |
tctaatacaagataa |
5154595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 5154789 - 5154725
Alignment:
| Q |
30 |
ttaaagtgcagtaggaattgttcaacaatgatattgtatgttagggaatcattatgaatagcatt |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5154789 |
ttaaagtgcagtaggaattgttcaacaatgatattgtatgttagggaatcattatgaatagcatt |
5154725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 26305676 - 26305614
Alignment:
| Q |
189 |
aatccttccaaataacatgacaatccatccaaatgaaaatatcaaaattctaatacaagataa |
251 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
26305676 |
aatccttccaaataacatgataatccatacaaatgaaaatatcaaaattctaatacaaaataa |
26305614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University