View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_54 (Length: 251)
Name: NF0931_low_54
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 6317168 - 6317405
Alignment:
| Q |
11 |
acaatatctaagtctcagtaagagtattattattcattaatcattaccttgctcgaatatacttggaaaatcagtcaaagtaaaatgtaaagcttgagtt |
110 |
Q |
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| T |
6317168 |
acaatatctaagtctcagtaagagtattattattcattaatcattaccttgctcgaatatacttggaaaatcagtcaaagtaaaatgtaaagcttgagtt |
6317267 |
T |
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| Q |
111 |
tcacattaccctgctagtcaaagtaaaagcagtcattgtataaagaataaaaaagtcacataccagctcagttcagactacttcatcagaagtgtccttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6317268 |
tcacattaccctgctagtcaaagtaaaagcagtcattgtataaagaataaaaaagccgcataccagctcagttcagactacttcatcagaagtgtccttt |
6317367 |
T |
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| Q |
211 |
actatagaagtctgttaaagcaagtaatagcaaattac |
248 |
Q |
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| T |
6317368 |
actatagaagtctgttaaagcaagtaatagcaaattac |
6317405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 6297523 - 6297570
Alignment:
| Q |
172 |
accagctcagttcagactacttcatcagaagtgtcctttactatagaa |
219 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
6297523 |
accagctctgttcagactacttcatcagaagtgtcctttactaaagaa |
6297570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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