View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_56 (Length: 251)
Name: NF0931_low_56
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_56 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 26457218 - 26456996
Alignment:
| Q |
29 |
attctcttgtgtgcagagtcaacagttgactttatgaaatttgaacttgtgacgtaaagctcatgctgaagaaaaaattagtgccatttcaagttaataa |
128 |
Q |
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| T |
26457218 |
attctcttgtgtgcagagtcaacagttgactttatgaaatttgaacttgtgacgtaaagctcgtgctgaagaaaaaattagtgccatttcaagttaataa |
26457119 |
T |
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| Q |
129 |
tcaactatgattgaacaaaagcacgcactaatatagtttggaatcagtaacaaaatttgagaaagaatgacaaaacatgtagagaaactttagtctaata |
228 |
Q |
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| T |
26457118 |
tcaactatgattggacaaaagcacacactaatatagtttggaatcagtaacaaaatttgagaaagaatgacaaaacatatagagaaactttagtctaata |
26457019 |
T |
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| Q |
229 |
tcaatgtgaacaatcatttgctt |
251 |
Q |
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| T |
26457018 |
tcaatgtgaacaatcatttgctt |
26456996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 29675916 - 29675717
Alignment:
| Q |
33 |
tcttgtgtgcagagtcaacagttgactttatgaaatttgaacttgtgacgtaaagctcatgctgaagaaaaaattagtgccatttcaagttaataatcaa |
132 |
Q |
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|||| |||||||||||||||| || ||| |||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||||||||||| |
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| T |
29675916 |
tcttctgtgcagagtcaacagctgcttttgtgaaatttgaacttgtgacgtaaagctcgtgctgaagaacaaattagaggcatttcaagttaataatcaa |
29675817 |
T |
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| Q |
133 |
ctatgattgaacaaaagcacgcactaatatagtttggaatcagtaacaaaatttgagaaagaatgacaaaacatgtagagaaactttagtctaatatcaa |
232 |
Q |
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||| ||| | |||||| ||||||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
29675816 |
ctacgatcggacaaaaacacgcactactatagtttggaatcagtgacaaaatgtgagaaagggtgacaaaacatgtagagaaactttagtctaatttcaa |
29675717 |
T |
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