View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_61 (Length: 247)
Name: NF0931_low_61
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_61 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 24619646 - 24619882
Alignment:
| Q |
11 |
acaatatctcctttaagtgtgagtcactcacgtatcctagttgatatgagacttaacactcacacttgaacttcaacaatctttgacacaagtgtgagtc |
110 |
Q |
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| T |
24619646 |
acaatatccccttcaagtgtgagtcactcacgtatcctagttgatatgagacttaacactcacacttgaacttcaacaatctttggcacaagtgtgagtc |
24619745 |
T |
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| Q |
111 |
acccacatcaccaacttgatccacactatgatcctggccccactctcccaccgagcctagacatccatgatcattaaaaaactttaagatattaagtatg |
210 |
Q |
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| T |
24619746 |
acccacatcactaacttgatccacactatgatcctggctccactcttccaccgatcttagacatccatgatcattaaaagactttaaggtattaagtatg |
24619845 |
T |
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| Q |
211 |
tgtgtcgcctctcaacatatcctcattcctaatcaat |
247 |
Q |
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| T |
24619846 |
tgtgtcgcctctcaacatgtcctcattcctaatcaat |
24619882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 2954371 - 2954473
Alignment:
| Q |
67 |
cactcacacttgaacttcaacaatctttgacacaagtgtgagtcacccacatcaccaacttgatccacactatgatcctggccccactctcccaccgagc |
166 |
Q |
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| T |
2954371 |
cactcacacttgaaactcaacaatctccccctcaagtgtgagtcacccacatcactagcttgatccacactaggatcttgctcccactcccccaccgagc |
2954470 |
T |
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| Q |
167 |
cta |
169 |
Q |
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| T |
2954471 |
cta |
2954473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 5981621 - 5981690
Alignment:
| Q |
99 |
caagtgtgagtcacccacatcaccaacttgatccacactatgatcctggccccactctcccaccgagccta |
169 |
Q |
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| T |
5981621 |
caagcgtgagtcacccacatcactagcctgatccacactaggatcccgctcccactc-cccaccgagccta |
5981690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 40195999 - 40196044
Alignment:
| Q |
99 |
caagtgtgagtcacccacatcaccaacttgatccacactatgatcc |
144 |
Q |
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| T |
40195999 |
caagtgtgagtcacccacatcactagcctgatccacactaggatcc |
40196044 |
T |
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