View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_68 (Length: 228)
Name: NF0931_low_68
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_68 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 14224762 - 14224984
Alignment:
| Q |
6 |
acacagttgttcactatacattttaaaaagcgacaactgaaattaaaaagtaaacaaacccttggtatcacgattttaatttcatcattccttatttagt |
105 |
Q |
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| T |
14224762 |
acacagttgttcactatacattttaaaaagcgacagctgaaattaaaaagtaaacaaacccttggtatcacgattttaatttcatcattccttatttagt |
14224861 |
T |
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| Q |
106 |
atcacatgtcttccctagcttatctaggatgagaatattggtgatttccttttgattcaacttgaatatcctctaaaaatagaagaaactttatttggaa |
205 |
Q |
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| T |
14224862 |
atcccatgtcttgcctagcttatctaggatgagaatattggtgatttccttttgattcaacttgaatatcctctaaaaatagaagaaactttatttggaa |
14224961 |
T |
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| Q |
206 |
atttagttaacttctttaccttt |
228 |
Q |
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| T |
14224962 |
atttagttaacttctttaccttt |
14224984 |
T |
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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 14232103 - 14232194
Alignment:
| Q |
135 |
tgagaatattggtgatttccttttgattcaacttgaatatcctctaaaaatagaagaaactttatttgg-aaatttagttaacttctttacc |
225 |
Q |
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| T |
14232103 |
tgagaatatcggtgatttccttttgattcaaattgaatatcctctaaaaataaaagagaatttatttggaaaatttagttaacttctttacc |
14232194 |
T |
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