View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_low_9 (Length: 457)
Name: NF0931_low_9
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 137 - 397
Target Start/End: Original strand, 2018327 - 2018587
Alignment:
| Q |
137 |
gtctcgtccaaagattacggaattaacccttgcacaatattaaccctacaaaaataaaactagggttcacacttatacctcgctgtgaacaagaacaacc |
236 |
Q |
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| T |
2018327 |
gtctcgtccaaagattacggaattaacccttgcacactattaaccctacaaaaataaaactagggttcacacttatacctcgctgtgaacaagaacaacc |
2018426 |
T |
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| Q |
237 |
atggaatcactacctgacgacgttctgtatcacattctgtcgttccttccgacgagggatgctgttgctactagccttctgtcaaagagatggaaaccac |
336 |
Q |
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| T |
2018427 |
atggaatcactacctgacgacgttctgtgtcacattctgtcgttccttccgacgagggatgctgttgctactagccttctgtcaaagagatggaaaccac |
2018526 |
T |
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| Q |
337 |
tctggctctccctccgttccttcgaccttgatgacaactacttttccgacttccacaggtt |
397 |
Q |
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| T |
2018527 |
tctggctctccttccgttccttcgaccttgatgacaactacttttccgacttccacaggtt |
2018587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 246 - 361
Target Start/End: Original strand, 2005585 - 2005700
Alignment:
| Q |
246 |
ctacctgacgacgttctgtatcacattctgtcgttccttccgacgagggatgctgttgctactagccttctgtcaaagagatggaaaccactctggctct |
345 |
Q |
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| T |
2005585 |
ctacctgacgatcttcgatgtcacattctgtcatgccttccgacgagagatgcgtctgctactagccttctgtcaaagagatggaaaccactttggctct |
2005684 |
T |
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| Q |
346 |
ccctccgttccttcga |
361 |
Q |
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| T |
2005685 |
cactccgttccttcga |
2005700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 249 - 358
Target Start/End: Original strand, 2011762 - 2011871
Alignment:
| Q |
249 |
cctgacgacgttctgtatcacattctgtcgttccttccgacgagggatgctgttgctactagccttctgtcaaagagatggaaaccactctggctctccc |
348 |
Q |
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| T |
2011762 |
cctgacgatgttcggtgtcacattctctcattccttccaacgagagatgctgctgctacaagtcttctatcaaagagatggaaaccactttggctctcgc |
2011861 |
T |
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| Q |
349 |
tccgttcctt |
358 |
Q |
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| T |
2011862 |
tccgttcctt |
2011871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 404 - 456
Target Start/End: Complemental strand, 2018416 - 2018364
Alignment:
| Q |
404 |
gttcactgcgaggtataagtgtgaaccctatttttatttttgtagggttaata |
456 |
Q |
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| T |
2018416 |
gttcacagcgaggtataagtgtgaaccctagttttatttttgtagggttaata |
2018364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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