View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0933_low_1 (Length: 460)
Name: NF0933_low_1
Description: NF0933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0933_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 93 - 438
Target Start/End: Original strand, 34444465 - 34444808
Alignment:
| Q |
93 |
tttaagaagttacataataagccaacatctacccttttaaaatttggaattgttgtcgcatttcaaagttagccaatgatttggctaataatcctcgaaa |
192 |
Q |
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| T |
34444465 |
tttaagaagttacataacaagccaacatctacccttttaaaatttggaattgttgttgcatttcaaagttagccgatggtttagctaataatcctcgaaa |
34444564 |
T |
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| Q |
193 |
ttttgtgagtggctaaactaatgaaaatataagtaaatgtaaaataataagttgcgagaaaatgacaagtttgattgagattgtgtgtcgaaaataaaac |
292 |
Q |
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| T |
34444565 |
ttttgtgagtggctaaactaatgaaaatataagtaaatgtaaaataataagttgcgagaaaatgacaagtttgatt--gattgtatgtcgaaaataaaat |
34444662 |
T |
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| Q |
293 |
gtaaaatgagttccttatggtcaaaacaccatggcctaaaaaatttagtcttgactcgccttaagcaactttatttcgtgagtgatgtgtgtttctgcca |
392 |
Q |
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| T |
34444663 |
gtaaaatgagttccttatggtcaaaacaccatggcctaaaaaatttagtcttgactcgccttaagcagctttatttcgtgagtgatgtgtgtttctgcca |
34444762 |
T |
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| Q |
393 |
gttactcagaatacatggcgtcccatgtttgactggacttcttcat |
438 |
Q |
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| T |
34444763 |
gttactcagagtacatggcgtcccatgtttaactggacttcttcat |
34444808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 43 - 220
Target Start/End: Original strand, 34444287 - 34444464
Alignment:
| Q |
43 |
ttttatagctaatgacatttcaacgtgaaattcttttcttttagctaatatttaagaagttacataataagccaacatctacccttttaaaatttggaat |
142 |
Q |
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| T |
34444287 |
ttttatagccaatgacatttcaacgtgaaattcttttcttttagctaatatttaagaagttacataacaagctaacatctacccttttaaaatttggaat |
34444386 |
T |
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| Q |
143 |
tgttgtcgcatttcaaagttagccaatgatttggctaataatcctcgaaattttgtgagtggctaaactaatgaaaat |
220 |
Q |
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| T |
34444387 |
tgttgtcgcatttcaaagttagccgatgatttggctaataatcctcagaattttgtgagtgactaaactaatgaaaat |
34444464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 34461608 - 34461662
Alignment:
| Q |
234 |
aaataataagttgcgagaaaatgacaagtttgattgagattgtgtgtcgaaaataaaa |
291 |
Q |
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| T |
34461608 |
aaataatatattgcgagaaaatgacaagtttgatt---aatgtgtgtcgaaaataaaa |
34461662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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