View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0933_low_2 (Length: 400)
Name: NF0933_low_2
Description: NF0933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0933_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 30 - 391
Target Start/End: Complemental strand, 7096475 - 7096114
Alignment:
| Q |
30 |
gttaagtccactattttgccagatatcaagagccctgtataattttcagccacaatggaagtttttatgattaagaacttacccatgctatgagttgaat |
129 |
Q |
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| T |
7096475 |
gttaagtccactgttttgccagatatcaagagccctgtataattttcagccacaatggaagtttttatgattaagaacttacccatgctatgagttgaat |
7096376 |
T |
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| Q |
130 |
gagcttctccaaaatgctacttaattctgctgttagtcgaaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacataggctac |
229 |
Q |
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| T |
7096375 |
gagcttctccaaaatgctacttaattctgctgttagtcgaaatattcagccttccatggatgatccaaatgttgaatcacataaaggtaacataggctac |
7096276 |
T |
|
| Q |
230 |
tctcaggtgtcagttgtggttgatttttctaattcttttttcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaatatttaa |
329 |
Q |
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| T |
7096275 |
tctcaggtatcagttgtggttgatttttctaattcttttttcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaatatttaa |
7096176 |
T |
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| Q |
330 |
atttaaatggtttatcatttgtcattaataatagtgcatcaatgtcgtcattggagtataat |
391 |
Q |
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| T |
7096175 |
atttaaatggtttatcatttgtcattaataatagtgcattaatgtcgtcattggattataat |
7096114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 169 - 356
Target Start/End: Original strand, 7584826 - 7585012
Alignment:
| Q |
169 |
aaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacataggctactctcaggtgtcagttgtggttgatttttctaattctttt |
268 |
Q |
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| T |
7584826 |
aaatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttgtgattgatttttgtaaaaaaata |
7584925 |
T |
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| Q |
269 |
ttcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaatatttaaatttaaatgg-tttatcatttgtcatta |
356 |
Q |
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| T |
7584926 |
t-catctatttaaaa-caataactattgaatattggcatatcataattaagaaatatttaaatttaaatggttttatcatttgtcatta |
7585012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 169 - 353
Target Start/End: Complemental strand, 17980484 - 17980299
Alignment:
| Q |
169 |
aaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacataggctactctcaggtgtcagttgtggttgatttttctaattctttt |
268 |
Q |
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| T |
17980484 |
aaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacttaggctattctcaggtgtcatttgtggttgatttttgtaaaaaaaaa |
17980385 |
T |
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| Q |
269 |
ttcatctatttaaaaacaaaagctattgaaca-tcggcatatcataattaagaaatatttaaatttaaatggtttatcatttgtca |
353 |
Q |
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| T |
17980384 |
atcatctattttaaaacaaaaaatactgaaaattcagcatatgataattaagaaatatttaaatttaaatggtttatcatttgtca |
17980299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 234 - 349
Target Start/End: Original strand, 9623885 - 9623999
Alignment:
| Q |
234 |
aggtgtcagttgtggttgatttttctaattcttttttcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaa-tatttaaatt |
332 |
Q |
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||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| || |||||| |
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| T |
9623885 |
aggtgtcagttgtagttgatttttgtaatt--tttttcatctatttaaaaacaaaaactattgaacattggcatatcataattaaaaaattaaataaatt |
9623982 |
T |
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| Q |
333 |
taaatggtttatcattt |
349 |
Q |
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| T |
9623983 |
taaatggtttatcattt |
9623999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 9623625 - 9623702
Alignment:
| Q |
169 |
aaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacataggctactctcaggtgtcagttgt |
246 |
Q |
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| T |
9623625 |
aaatattcagctttccatgcaggatccaaatgttgaatcacataaaggtaacctaggctaatctcaggtgtcagttgt |
9623702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 13613360 - 13613246
Alignment:
| Q |
234 |
aggtgtcagttgtggttgatttttctaattcttttttcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaa-tatttaaatt |
332 |
Q |
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||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| || |||||| |
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| T |
13613360 |
aggtgtcagttgtagttgatttttgtaatt--tttttcatctatttaaaaacaaaaactattgaacattggcatatcataattaaaaaattaaataaatt |
13613263 |
T |
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| Q |
333 |
taaatggtttatcattt |
349 |
Q |
| |
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||||||||||||||||| |
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| T |
13613262 |
taaatggtttatcattt |
13613246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 13613620 - 13613543
Alignment:
| Q |
169 |
aaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacataggctactctcaggtgtcagttgt |
246 |
Q |
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| T |
13613620 |
aaatattcagctttccatgcaggatccaaatgttgaatcacataaaggtaacctaggctaatctcaggtgtcagttgt |
13613543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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