View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0933_low_3 (Length: 351)
Name: NF0933_low_3
Description: NF0933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0933_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 29 - 340
Target Start/End: Complemental strand, 49107982 - 49107659
Alignment:
| Q |
29 |
aatagaatcagttgcggtagaaataagcaaatctgcattcaaaacataagaatatggtattttctaagtataagttnnnnnnnnnn-----------gaa |
117 |
Q |
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| T |
49107982 |
aatagaatcagttgcggtagaaataagcaaatctgcattcaaaacataagaatatggtattttctaagtataagttaaaaaaaaaaaaaaaaaaaaagaa |
49107883 |
T |
|
| Q |
118 |
ctaactagtagagagggagcggattctccatctctagtttacatataa-gaaattaaagtcttactcaattaatgattagagattacattttactctctc |
216 |
Q |
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| T |
49107882 |
ctaactagtagagagggagcggattctccatctgtagtttacatataaagaaattaaagtcttactcaattaatgattagagattacattttactctctc |
49107783 |
T |
|
| Q |
217 |
atgtgtaaattacacatgagaaaattcatggtcgtaaagatcattcaacttataaaatggtcgtgtatattatatttttaaagatagactatttacatat |
316 |
Q |
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| T |
49107782 |
acgtgtaaattacacatgagaaaattcatggtcgtaaagatcattcgacttataaaatggtcatgtatattatatttttaaagattgactatttacatat |
49107683 |
T |
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| Q |
317 |
ctaaatccctttatactgtcctat |
340 |
Q |
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||||||| ||||||| |||||||| |
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| T |
49107682 |
ctaaatctctttatattgtcctat |
49107659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 3229094 - 3229144
Alignment:
| Q |
187 |
taatgattagagattacattttactctctcatgtgtaaattacacatgaga |
237 |
Q |
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| T |
3229094 |
taatggttagagatcacactttattctctcatgtgtaaattacacatgaga |
3229144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 3238294 - 3238258
Alignment:
| Q |
197 |
agattacattttactctctcatgtgtaaattacacat |
233 |
Q |
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| T |
3238294 |
agattacactttactctctaatgtgtaaattacacat |
3238258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 14447086 - 14447050
Alignment:
| Q |
200 |
ttacattttactctctcatgtgtaaattacacatgag |
236 |
Q |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
14447086 |
ttacactttactctctcatgtgtaaattacacatgag |
14447050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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