View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0933_low_4 (Length: 303)
Name: NF0933_low_4
Description: NF0933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0933_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 29 - 294
Target Start/End: Original strand, 48544808 - 48545076
Alignment:
| Q |
29 |
agaaagcaggggaaacaaaatatgcaaaatgagtataaggaaataatgtgaaaaaatcaacgattttagaagaactggtnnnnnnntattaacagcaaaa |
128 |
Q |
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| T |
48544808 |
agaaagcatgggaaacaaaatatgcaaa-tgagtataaggaaataatgtgaaaaaatcaacgattttagaagaactggtaaaaaa-tattaacagcaaaa |
48544905 |
T |
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| Q |
129 |
gttttgt--ggtgccaaagaaggacgaatatttcttttgtagttcctagtaacttggctccacctccatcttctc---annnnnnnnnnnnnngaaggat |
223 |
Q |
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| T |
48544906 |
gttttgtttggtgccaaagaaggacgaatatttcttttgtagttcctagtaacttggctccacctccatcttctcgtttttttttttttttttgaaggat |
48545005 |
T |
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| Q |
224 |
ctcattttttatatagatcattaaagaaaattcatttaccgataaaaatacgcctgaagtattagtataat |
294 |
Q |
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| T |
48545006 |
ctcattttttatatagatcattaaagaaaatccatttaccgataaaaatacacctgaagtattagtataat |
48545076 |
T |
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