View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0933_low_5 (Length: 268)

Name: NF0933_low_5
Description: NF0933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0933_low_5
NF0933_low_5
[»] chr7 (18 HSPs)
chr7 (30-242)||(26088167-26088379)
chr7 (30-242)||(26111955-26112167)
chr7 (30-235)||(26128959-26129164)
chr7 (30-242)||(19103097-19103309)
chr7 (30-215)||(26155600-26155785)
chr7 (55-235)||(26186634-26186814)
chr7 (30-226)||(26191666-26191862)
chr7 (45-242)||(26179468-26179665)
chr7 (59-190)||(26251285-26251416)
chr7 (45-192)||(26302244-26302391)
chr7 (59-194)||(26242833-26242968)
chr7 (59-194)||(26297881-26298016)
chr7 (59-159)||(26278167-26278267)
chr7 (57-213)||(26204299-26204455)
chr7 (57-213)||(26223937-26224093)
chr7 (50-192)||(26260307-26260449)
chr7 (50-115)||(26227484-26227549)
chr7 (50-120)||(26207918-26207988)
[»] chr4 (1 HSPs)
chr4 (45-194)||(44903686-44903835)
[»] chr5 (1 HSPs)
chr5 (57-106)||(5995053-5995102)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 26088379 - 26088167
Alignment:
Q  30 tcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26088379 tcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcgagaccgtgtgcaatttctacaatctgagcattatcaagcc 26088280  T
Q  130 cagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtgtcc 229  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26088279 taattagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtgtcc 26088180  T
Q  230 cctattggccttt 242  Q
    |||||||||||||    
T  26088179 cctattggccttt 26088167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 26112167 - 26111955
Alignment:
Q  30 tcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26112167 tcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcgagaccgtgtgcaatttctacaatctgagcattatcaagcc 26112068  T
Q  130 cagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtgtcc 229  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26112067 taattagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtgtcc 26111968  T
Q  230 cctattggccttt 242  Q
    |||||||||||||    
T  26111967 cctattggccttt 26111955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 26129164 - 26128959
Alignment:
Q  30 tcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcc 129  Q
    ||||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26129164 tcactctcatcgctctcctttttccttacaacccatataaaattatgacctgaattttcgagaccgtgtgcaatttctacaatctgagcattatcaagcc 26129065  T
Q  130 cagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtgtcc 229  Q
     |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  26129064 tagttagacttccaaaacttacatacagtacggactcattttgctttgagttaagccaatttaaccagtctgcctcttttccaagctcctctatgtgtcc 26128965  T
Q  230 cctatt 235  Q
    ||||||    
T  26128964 cctatt 26128959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 30 - 242
Target Start/End: Original strand, 19103097 - 19103309
Alignment:
Q  30 tcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcc 129  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||    
T  19103097 tcactctcatctctctcatttttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcgatttctacaatctgatcattttcaagcc 19103196  T
Q  130 cagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtgtcc 229  Q
     |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||    
T  19103197 tagttagacttccaaaacttacatacaatacagactcattttgctttgagttaagccaatttagccactcttcctcttttccgatctcctctacgtgccc 19103296  T
Q  230 cctattggccttt 242  Q
    |||| ||||||||    
T  19103297 cctactggccttt 19103309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 26155785 - 26155600
Alignment:
Q  30 tcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcc 129  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26155785 tcactctcatcgctctcctttttccttacaacccagataaaattatgacctgaattttcgagaccgtgtgcaatttctacaatctgagcattatcaagcc 26155686  T
Q  130 cagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagc 215  Q
     ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||  ||||||||||||||    
T  26155685 tagttagacttccaaaacttacatacaatacggactcattttgctttgtgttaagccaatttaaccactcggcctcttttccaagc 26155600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 55 - 235
Target Start/End: Complemental strand, 26186814 - 26186634
Alignment:
Q  55 ttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacata 154  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||    
T  26186814 ttacaacccagataaaattatgatctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcctagttacacttccaaaacttaaata 26186715  T
Q  155 caatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtgtcccctatt 235  Q
    || |||||||||| ||| ||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||    
T  26186714 cagtacggactcaatttgctttgagttaagccaatttagccactcttcctcttctgcaagctcctccatgtgtcccctatt 26186634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 26191862 - 26191666
Alignment:
Q  30 tcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcc 129  Q
    |||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| |   ||||    
T  26191862 tcactctcatccatatcatttttccttacaacccagataaaattatgacctgaattttcaagcccatgtgcaatttctacaagctgagcatgagttagcc 26191763  T
Q  130 cagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtg 226  Q
     ||||| ||||||||| |||||||| | ||| |||||||||| |||||||||||||||||||||||||||| || ||||||||  ||||||||||||    
T  26191762 tagttaaacttccaaagcttacataaagtacagactcattttgctttgagttaagccaatttagccactctgccacttttccattctcctctatgtg 26191666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 242
Target Start/End: Complemental strand, 26179665 - 26179468
Alignment:
Q  45 tcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaa 144  Q
    ||||||||  ||| ||||||||||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||||    || || |   || || ||||    
T  26179665 tcatatttttttataacccagataaaattttgacctgagttttcaagcccgtgcgcaatttctacaagctgagcatgcggaaacctaacaaggctaccaa 26179566  T
Q  145 aacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtgtcccctattggccttt 242  Q
    |||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||    
T  26179565 aacttacatataatacagactcattttgctttgagttaagccaatttagccattcttcctcttttccaagttcctctatgtgtccccttttggccttt 26179468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 26251416 - 26251285
Alignment:
Q  59 aacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaat 158  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| |  ||||| ||| || || ||||||||||||||||||    
T  26251416 aacccagataaaattatgacctgaattttcaagcccatgtgcaatttctacaagctgagcatgaggaagcctagtaaggctgccaaaacttacatacaat 26251317  T
Q  159 acggactcattttcctttgagttaagccaatt 190  Q
    || |||||||||| ||| ||||||||||||||    
T  26251316 actgactcattttgcttcgagttaagccaatt 26251285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 45 - 192
Target Start/End: Complemental strand, 26302391 - 26302244
Alignment:
Q  45 tcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaa 144  Q
    |||||||| | ||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| |  | ||| |   || || ||||    
T  26302391 tcatattttcgtacgacccaaataaaactatgacctgaattttcaagcccgtgtgcaatttctacaagctgagcatgaggatgccaaacaaggctgccaa 26302292  T
Q  145 aacttacatacaatacggactcattttcctttgagttaagccaattta 192  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||    
T  26302291 aacttacatacaatacagactcattttgctttgagttaagccaattta 26302244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 26242968 - 26242833
Alignment:
Q  59 aacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaat 158  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |  || || |||  | || ||||||||||||||||||    
T  26242968 aacccagataaaattatgacctgaattttcaagcccgtgagcaatttctacaagctgagcatgaggaaacctagtctggctgccaaaacttacatacaat 26242869  T
Q  159 acggactcattttcctttgagttaagccaatttagc 194  Q
    || |||||||||| |||   ||||||||||||||||    
T  26242868 acagactcattttgcttcaggttaagccaatttagc 26242833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 26298016 - 26297881
Alignment:
Q  59 aacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaat 158  Q
    ||||||||||||||||||||||||||||||||| || ||  |||||||||||| |||||||| |  ||||| ||| |  || ||||||||||||||||||    
T  26298016 aacccagataaaattatgacctgaattttcaagcccatgaacaatttctacaagctgagcataaggaagcctagtaaagctgccaaaacttacatacaat 26297917  T
Q  159 acggactcattttcctttgagttaagccaatttagc 194  Q
    || || ||||||||||| || |||||||||||||||    
T  26297916 acagattcattttccttcgaattaagccaatttagc 26297881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 26278267 - 26278167
Alignment:
Q  59 aacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaat 158  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |  ||||| | | || || ||||| ||||||||||||    
T  26278267 aacccagataaaattatgacctgaattttcaagcccgtgtgcaatttctacaagctgagcatgaggaagcctaataaggctgccaaagcttacatacaat 26278168  T
Q  159 a 159  Q
    |    
T  26278167 a 26278167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 213
Target Start/End: Complemental strand, 26204455 - 26204299
Alignment:
Q  57 acaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacataca 156  Q
    |||||||| || ||||||||||| |||||||||||||| || || |||||  |||||||  ||| |  ||||| ||| || |||||||||||||||||||    
T  26204455 acaacccaaatgaaattatgaccagaattttcaagaccatgagctatttcagcaatctgttcatgagaaagcctagtaaggcttccaaaacttacataca 26204356  T
Q  157 atacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaa 213  Q
    | || ||||| |||||||| || ||||||||||||| | | ||||  ||||||||||    
T  26204355 acacagactcgttttccttagaattaagccaatttaccaattcttgatcttttccaa 26204299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 213
Target Start/End: Complemental strand, 26224093 - 26223937
Alignment:
Q  57 acaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacataca 156  Q
    |||||||| || ||||||||||| |||||||||||||| || || |||||  |||||||  ||| |  ||||| ||| || |||||||||||||||||||    
T  26224093 acaacccaaatgaaattatgaccagaattttcaagaccatgagctatttcagcaatctgttcatgagaaagcctagtaaggcttccaaaacttacataca 26223994  T
Q  157 atacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaa 213  Q
    | || ||||| |||||||| || ||||||||||||| | | ||||  ||||||||||    
T  26223993 acacagactcgttttccttagaattaagccaatttaccaattcttgatcttttccaa 26223937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 26260449 - 26260307
Alignment:
Q  50 tttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaactt 149  Q
    |||||| |||||||| || ||||||||||||||||||||||| || || || ||||| |||| |||||||| |  ||||| ||| |  ||||||||||||    
T  26260449 tttcctaacaacccaaatgaaattatgacctgaattttcaagtccatgagctatttcaacaacctgagcataagaaagcctagtcaagcttccaaaactt 26260350  T
Q  150 acatacaatacggactcattttcctttgagttaagccaattta 192  Q
    |||||||| || || |||||    || ||||||||||||||||    
T  26260349 acatacaacacagaatcattagggttagagttaagccaattta 26260307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 26227549 - 26227484
Alignment:
Q  50 tttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctg 115  Q
    |||||| |||||||| || |||||||||||||||||||||||||| || || ||||||||||||||    
T  26227549 tttcctaacaacccaaatgaaattatgacctgaattttcaagaccatgagctatttctacaatctg 26227484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 26207988 - 26207918
Alignment:
Q  50 tttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcat 120  Q
    |||||| |||||||| || ||||||||||| |||||||| ||||| || || |||||||||||||||||||    
T  26207988 tttcctaacaacccaaatgaaattatgaccggaattttccagaccatgagctatttctacaatctgagcat 26207918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 45 - 194
Target Start/End: Complemental strand, 44903835 - 44903686
Alignment:
Q  45 tcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaa 144  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| |||||||| |  ||||  ||| || |||||||    
T  44903835 tcatttttccttacaacccagataaaattatgacctgacttttcaagcccatgtgcaatttctacaagctgagcatgaaaaagcttagtaaggcttccaa 44903736  T
Q  145 aacttacatacaatacggactcattttcctttgagttaagccaatttagc 194  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||||||    
T  44903735 aacttacatacaacacagactcattttgctttgagttaagccaatttagc 44903686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 5995053 - 5995102
Alignment:
Q  57 acaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttc 106  Q
    |||||||| || |||||||||||||||||||||||  | |||||||||||    
T  5995053 acaacccaaatgaaattatgacctgaattttcaagtgcatgtgcaatttc 5995102  T

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