View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0933_low_6 (Length: 257)

Name: NF0933_low_6
Description: NF0933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0933_low_6
NF0933_low_6
[»] chr4 (20 HSPs)
chr4 (34-236)||(55908589-55908791)
chr4 (59-234)||(7225769-7225944)
chr4 (34-223)||(546962-547151)
chr4 (34-236)||(1600455-1600657)
chr4 (84-236)||(1524397-1524549)
chr4 (86-229)||(659752-659895)
chr4 (62-190)||(6006409-6006538)
chr4 (111-236)||(12116513-12116638)
chr4 (93-217)||(53761692-53761816)
chr4 (81-154)||(8186999-8187072)
chr4 (34-101)||(12121318-12121385)
chr4 (81-147)||(3438474-3438540)
chr4 (81-146)||(1533898-1533963)
chr4 (82-148)||(1552676-1552739)
chr4 (81-127)||(1495830-1495876)
chr4 (173-235)||(8184030-8184092)
chr4 (111-236)||(553515-553640)
chr4 (92-148)||(641039-641095)
chr4 (174-234)||(1519143-1519203)
chr4 (135-223)||(55505070-55505158)
[»] chr2 (2 HSPs)
chr2 (34-236)||(1037525-1037727)
chr2 (59-236)||(32785661-32785835)
[»] scaffold0295 (1 HSPs)
scaffold0295 (44-236)||(495-687)
[»] chr6 (9 HSPs)
chr6 (34-184)||(7119245-7119392)
chr6 (34-184)||(7131723-7131870)
chr6 (92-236)||(6394900-6395044)
chr6 (92-222)||(6402910-6403040)
chr6 (92-217)||(6426566-6426691)
chr6 (92-236)||(6432197-6432341)
chr6 (92-236)||(6594525-6594669)
chr6 (92-223)||(14820742-14820873)
chr6 (93-141)||(8913904-8913952)
[»] chr8 (2 HSPs)
chr8 (34-236)||(18315134-18315336)
chr8 (34-114)||(32151456-32151536)
[»] chr3 (6 HSPs)
chr3 (92-236)||(51113700-51113844)
chr3 (93-184)||(13470652-13470743)
chr3 (101-184)||(51764368-51764451)
chr3 (114-236)||(51120834-51120956)
chr3 (60-165)||(514615-514720)
chr3 (81-145)||(1657374-1657438)
[»] chr7 (2 HSPs)
chr7 (92-150)||(10614715-10614773)
chr7 (86-138)||(7977712-7977764)
[»] chr5 (1 HSPs)
chr5 (82-236)||(41889463-41889617)
[»] scaffold0807 (1 HSPs)
scaffold0807 (97-149)||(1388-1440)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 55908589 - 55908791
Alignment:
Q  34 ttccattttccccaatttactatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttaga 133  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908589 ttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttaga 55908688  T
Q  134 catttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatg 233  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908689 catttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatg 55908788  T
Q  234 atg 236  Q
    |||    
T  55908789 atg 55908791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 59 - 234
Target Start/End: Original strand, 7225769 - 7225944
Alignment:
Q  59 cttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttcta 158  Q
    |||||||||||||| | ||||||||| | |||||||||  ||||| ||||| || |||||||||||||| ||||||||||||| ||| |||||||| | |    
T  7225769 cttgatttgagctcttcccataacatgtatgaagaaggggtttgtcaagttttacggagatgttgtaagattagacatttgaacttatcctactgtccaa 7225868  T
Q  159 gagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatga 234  Q
    ||||||| ||||  |  || |||||| ||||||  ||||| ||||| || ||||||||||||||| | ||||||||    
T  7225869 gagtgaagctacgcaacatgaactttgaagttctcgaattggaggtcttgaacttgtcacatacaagagttgatga 7225944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 547151 - 546962
Alignment:
Q  34 ttccattttccccaatttactatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttaga 133  Q
    |||||| ||||||||||| | | | |||||||| || |  || | |||||||||||||||  |||||||||| ||| ||||||||||||||||| | ||     
T  547151 ttccatgttccccaatttgcaactgcttgatttaagttattgtcgtaacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataagg 547052  T
Q  134 catttgaatttagcctactgttctag-agtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacataca 223  Q
    |||||||| ||| || | |||| ||| |||||| ||| || |||| |||||| |||||||| |||| |||||| | |||||||||| ||||    
T  547051 catttgaacttatccaattgtt-tagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtaca 546962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 1600657 - 1600455
Alignment:
Q  34 ttccattttccccaatttactatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttaga 133  Q
    ||||| ||| |||||||| | | | ||||||||||||   |||  ||||||||||||||||||||||||| ||||| ||||||||| || |||  |||||    
T  1600657 ttccaattttcccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagattttctaaaattaga 1600558  T
Q  134 catttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatg 233  Q
    |||||||| |||||| | ||||| | | |||| || |   |||| |||||| |||||| | || | |||||||| ||||||||| ||||| | ||||| |    
T  1600557 catttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacg 1600458  T
Q  234 atg 236  Q
    |||    
T  1600457 atg 1600455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 236
Target Start/End: Original strand, 1524397 - 1524549
Alignment:
Q  84 tatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaactt 183  Q
    |||||||||||||||||  | | ||| ||||||||||||||||  |||| |||||||| |||||| ||||||||| | |  |||| | | |||| |||||    
T  1524397 tatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaacttcatggaatgaactt 1524496  T
Q  184 taaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatg 236  Q
    | |||||||  | || |||||||| || ||||||| |||| ||||||||||||    
T  1524497 tgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatg 1524549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 229
Target Start/End: Complemental strand, 659895 - 659752
Alignment:
Q  86 tctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaacttta 185  Q
    |||||||||| |||| || || || ||||||||||||||||  ||||| |||| || ||||||| |||||| |||| ||| ||||    |||||| |||     
T  659895 tctgaagaagatattggtcaaattttaaggagatgttgtaacattagatatttaaacttagcctgctgttcaagagggaagctacgagtaataaattttg 659796  T
Q  186 aagttcctgaattagaggtgtttaacttgtcacatacatgtgtt 229  Q
    |||||||  || |||||||||| ||||||||||||||| |||||    
T  659795 aagttcccaaactagaggtgttgaacttgtcacatacaagtgtt 659752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 6006538 - 6006409
Alignment:
Q  62 gatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaa-tttagcctactgttctaga 160  Q
    ||||||||||| ||| |  |||||||||| |||||| ||  | ||||| |||||| |||| ||||| ||||||||||||| || | || ||||||| |||    
T  6006538 gatttgagctcttgcgagtacatatctgatgaaggtgttgctcaagttttaaggaaatgtagtaagattagacatttgaacttaaaccaactgttcaaga 6006439  T
Q  161 gtgaaactacttagaataaactttaaagtt 190  Q
     |||| |||||||||||| |||||||||||    
T  6006438 ctgaagctacttagaatagactttaaagtt 6006409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 12116513 - 12116638
Alignment:
Q  111 taaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaa 210  Q
    ||||||||||||||||  | || ||||  || |||||||||||||| | | | ||||| | |||||| |||||| | |||||  | ||||||||||| ||    
T  12116513 taaggagatgttgtaaactaaggcattaaaacttagcctactgttcaaaaataaaactgcgtagaatgaactttgatgttccaaatttagaggtgttgaa 12116612  T
Q  211 cttgtcacatacatgtgttgatgatg 236  Q
    ||||||||||||| ||||||||||||    
T  12116613 cttgtcacatacaagtgttgatgatg 12116638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 217
Target Start/End: Original strand, 53761692 - 53761816
Alignment:
Q  93 aaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttcc 192  Q
    ||||||||||| ||||| ||||||||||||||||  |||| |||||||| |||||| | ||||| |||||||| ||| || |||| ||||||  ||||||    
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcc 53761791  T
Q  193 tgaattagaggtgtttaacttgtca 217  Q
      |  |||||| ||| |||||||||    
T  53761792 caagctagaggcgttgaacttgtca 53761816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 8186999 - 8187072
Alignment:
Q  81 acatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgt 154  Q
    ||||||||||||||||||||||| ||||| | | |||||||||| || ||||  ||||||| ||||||||||||    
T  8186999 acatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaacttagcctactgt 8187072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 12121318 - 12121385
Alignment:
Q  34 ttccattttccccaatttactatttcttgatttgagctcctgccataacatatctgaagaaggtattt 101  Q
    |||| ||||||||||||| | ||| ||||||||||| |  ||| ||||||||||||||||||||||||    
T  12121318 ttccgttttccccaatttgcaattgcttgatttgagtttttgctataacatatctgaagaaggtattt 12121385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 3438474 - 3438540
Alignment:
Q  81 acatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagc 147  Q
    |||||||||| |||||| ||  | ||||| ||||||||||||||||| ||||||||||||| |||||    
T  3438474 acatatctgacgaaggtgttattcaagttttaaggagatgttgtaagattagacatttgaacttagc 3438540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 1533898 - 1533963
Alignment:
Q  81 acatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttag 146  Q
    |||||||||||||||||||| || | ||| ||||||||||||||||| | | ||||||||| ||||    
T  1533898 acatatctgaagaaggtattagtcatgttttaaggagatgttgtaagatgacacatttgaacttag 1533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 1552676 - 1552739
Alignment:
Q  82 catatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcc 148  Q
    |||||| || |||||||||||||||||| ||||   |||||||||| ||||||||||||| ||||||    
T  1552676 catatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacatttgaacttagcc 1552739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 1495830 - 1495876
Alignment:
Q  81 acatatctgaagaaggtatttgtgaagttctaaggagatgttgtaag 127  Q
    |||||||||||||||||||| || | ||| |||||||||||||||||    
T  1495830 acatatctgaagaaggtattggtcatgttttaaggagatgttgtaag 1495876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 8184030 - 8184092
Alignment:
Q  173 agaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgat 235  Q
    ||||| |||||| |||||||  || |||||||||| ||||||||||||||| | |||||||||    
T  8184030 agaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgat 8184092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 553640 - 553515
Alignment:
Q  111 taaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaa 210  Q
    |||||| |||||||||  ||||||||||||| ||| ||  |||||| ||||||||  ||| || | | |||||||||||||   || | |||||||| ||    
T  553640 taaggacatgttgtaacattagacatttgaacttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaactggaggtgttgaa 553541  T
Q  211 cttgtcacatacatgtgttgatgatg 236  Q
    |||||||  |||| | ||||||||||    
T  553540 cttgtcatttacaagagttgatgatg 553515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 641095 - 641039
Alignment:
Q  92 gaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcc 148  Q
    ||||| |||| | ||||| |||||| ||||||||| |||||||||||||| ||||||    
T  641095 gaaggaatttttcaagttttaaggatatgttgtaatgttagacatttgaacttagcc 641039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 1519143 - 1519203
Alignment:
Q  174 gaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatga 234  Q
    |||| |||||| |||||||  || |||||||||| ||||||||||||||| | ||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatga 1519203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 55505070 - 55505158
Alignment:
Q  135 atttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacataca 223  Q
    |||||||  ||||||||||||| | |||||| ||| || |||| ||||||| ||| ||  || |||||||||| ||||||||| |||||    
T  55505070 atttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccaactagaggtgttgaacttgtcatataca 55505158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 1037525 - 1037727
Alignment:
Q  34 ttccattttccccaatttactatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttaga 133  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1037525 ttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttaga 1037624  T
Q  134 catttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatg 233  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1037625 catttgaatttagcctactattcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatg 1037724  T
Q  234 atg 236  Q
    |||    
T  1037725 atg 1037727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 236
Target Start/End: Original strand, 32785661 - 32785835
Alignment:
Q  59 cttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttcta 158  Q
    |||||||||||||  ||| |||||||||||||||||||||||||| || || ||   ||||||| |||| |||||||||||||||| | | ||| ||| |    
T  32785661 cttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaatttggaccacttttcaa 32785757  T
Q  159 gagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatg 236  Q
    || |  | |  | | |||| |||||||||| |||  || |||||||||| ||||||||||||||| |  |||||||||    
T  32785758 gaatcgagcaccgtcgaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 32785835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 44 - 236
Target Start/End: Original strand, 495 - 687
Alignment:
Q  44 cccaatttactatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatt 143  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  495 cccaatttacaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaatt 594  T
Q  144 tagcctactgttctagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatg 236  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  595 tagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatg 687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 7119392 - 7119245
Alignment:
Q  34 ttccattttccccaatttactatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttaga 133  Q
    |||| ||||||||||||||| | ||||||||||||   | ||| |||||||||||||||   |||||||| ||||| |||||||||||| |||| ||| |    
T  7119392 ttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaa 7119296  T
Q  134 catttgaatttagcctactgttctagagtgaaactacttagaataaacttt 184  Q
    |||||||| |||||| ||||||| |||||||| |||||| |||| ||||||    
T  7119295 catttgaacttagcccactgttcaagagtgaagctacttggaatgaacttt 7119245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 7131870 - 7131723
Alignment:
Q  34 ttccattttccccaatttactatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttaga 133  Q
    |||| ||||||||||||||| | ||||||||||||   | ||| |||||||||||||||   |||||||| ||||| |||||||||||| |||| ||| |    
T  7131870 ttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaa 7131774  T
Q  134 catttgaatttagcctactgttctagagtgaaactacttagaataaacttt 184  Q
    |||||||| |||||| ||||||| |||||||| |||||| |||| ||||||    
T  7131773 catttgaacttagcccactgttcaagagtgaagctacttggaatgaacttt 7131723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 6395044 - 6394900
Alignment:
Q  92 gaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttc 191  Q
    |||||||||||| ||||| ||| || |||||||||| ||| ||||||||| ||||| | |||||| | ||||||||||| | |||| ||||||  |||||    
T  6395044 gaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttc 6394945  T
Q  192 ctgaattagaggtgtttaacttgtcacatacatgtgttgatgatg 236  Q
    | ||  | |||||||| ||||||||| ||||| | ||||||||||    
T  6394944 ccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatg 6394900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 6403040 - 6402910
Alignment:
Q  92 gaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttc 191  Q
    |||||||||||| ||||| ||||||||||||||||  |||| |||||||| ||| |    ||||| |||||||| |||||| |||||||||||  |||||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttc 6402941  T
Q  192 ctgaattagaggtgtttaacttgtcacatac 222  Q
    |  || |||| ||||| ||||||||| ||||    
T  6402940 cccaactagaagtgttgaacttgtcagatac 6402910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 6426691 - 6426566
Alignment:
Q  92 gaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttc 191  Q
    |||||||||||||||||| |||||| |||||||||| ||| ||||||||| ||||| | |||||| |  |||||||||| | |||| ||||||  |||||    
T  6426691 gaaggtatttgtgaagttttaaggaaatgttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttc 6426592  T
Q  192 ctgaattagaggtgtttaacttgtca 217  Q
    | ||  | |||||||| || ||||||    
T  6426591 ccgagctggaggtgttgaatttgtca 6426566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 6432341 - 6432197
Alignment:
Q  92 gaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttc 191  Q
    |||||||||||| ||||| ||||||||||||||||  ||| ||||||||| |||||||| |||   | |||||| |||| | |||| |||||| ||||||    
T  6432341 gaaggtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttc 6432242  T
Q  192 ctgaattagaggtgtttaacttgtcacatacatgtgttgatgatg 236  Q
    |  |  |  ||||||| ||||||||| ||||| | ||||||||||    
T  6432241 ccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatg 6432197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 6594525 - 6594669
Alignment:
Q  92 gaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttc 191  Q
    |||||||||||| ||||| |||||||||||| |||| ||| ||||||| | ||| ||   ||||| |||||||| |||| | |||||||||||  |||||    
T  6594525 gaaggtatttgtcaagttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttc 6594624  T
Q  192 ctgaattagaggtgtttaacttgtcacatacatgtgttgatgatg 236  Q
    |  || | ||||||||  |||||||| |||||   ||||||||||    
T  6594625 ccaaactggaggtgttgtacttgtcaaatacagaggttgatgatg 6594669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 223
Target Start/End: Complemental strand, 14820873 - 14820742
Alignment:
Q  92 gaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttc 191  Q
    |||||||||||| ||| | |||||| |||||||||| ||| ||||||||| ||||  |  |||||  |||||||||||| | |||| ||||||  |||||    
T  14820873 gaaggtatttgtcaaggtttaaggaaatgttgtaagcttaaacatttgaacttagaattttgttcaggagtgaaactacatggaattaactttgcagttc 14820774  T
Q  192 ctgaattagaggtgtttaacttgtcacataca 223  Q
    |  | ||||||||||| ||||| ||| |||||    
T  14820773 ccaagttagaggtgttgaacttatcaaataca 14820742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 8913904 - 8913952
Alignment:
Q  93 aaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaa 141  Q
    ||||||||||| ||||| |||| |||||||||||| ||| |||||||||    
T  8913904 aaggtatttgtcaagttttaagaagatgttgtaagattaaacatttgaa 8913952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 18315134 - 18315336
Alignment:
Q  34 ttccattttccccaatttactatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttaga 133  Q
    |||||||||||||||||| |  || ||||||||||||| |||| |||||||| ||||||||||||||||| ||||| || | || |||| | || |||||    
T  18315134 ttccattttccccaatttgcagttgcttgatttgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattaga 18315233  T
Q  134 catttgaatttagcctactg-ttctagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgat 232  Q
    || ||||| |||| ||  || ||| ||| |||| |||| | |||| ||||||||||||||  || | |||||||| |||||||||||||||   ||||||    
T  18315234 cagttgaacttag-ctcgtgattcaagaatgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgat 18315332  T
Q  233 gatg 236  Q
    ||||    
T  18315333 gatg 18315336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 32151536 - 32151456
Alignment:
Q  34 ttccattttccccaatttactatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaag 114  Q
    |||||||||||| ||||| | | | ||||||||||| |  ||||||||||||||||||||||| |||||| ||||| ||||    
T  32151536 ttccattttccctaatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagttttaag 32151456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 51113700 - 51113844
Alignment:
Q  92 gaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttc 191  Q
    |||||||||||| ||||| ||| ||||||||||||  |||| |||||||| ||||| |||||||| | | |||| |||||| |||| |||||| ||| ||    
T  51113700 gaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctc 51113799  T
Q  192 ctgaattagaggtgtttaacttgtcacatacatgtgttgatgatg 236  Q
    |  || | ||||||||  |||||||| |||||   ||||||||||    
T  51113800 ccaaactggaggtgttagacttgtcaaatacaatggttgatgatg 51113844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 13470652 - 13470743
Alignment:
Q  93 aaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaacttt 184  Q
    ||||||||||| ||||| |||||| |||||||||| |||| |||||||| |||||||| |||   | |||||| |||||| |||| ||||||    
T  13470652 aaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacttt 13470743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 51764368 - 51764451
Alignment:
Q  101 tgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaacttt 184  Q
    ||||||||| |||||||||||| |||| |||| ||||||||  || || | ||||| |||||||| |||||| |||| ||||||    
T  51764368 tgtgaagttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaacttt 51764451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 51120834 - 51120956
Alignment:
Q  114 ggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaactt 213  Q
    |||||||||||||  ||||||| ||||| ||  ||   ||||| ||||||||||| | | |||| |||||| ||||||   |||| |||||||| |||||    
T  51120834 ggagatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgttgaactt 51120933  T
Q  214 gtcacatacatgtgttgatgatg 236  Q
    ||| |||||| | ||||||||||    
T  51120934 gtcgcatacaagagttgatgatg 51120956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 514615 - 514720
Alignment:
Q  60 ttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctag 159  Q
    ||||||||||||  ||  |||||||||||||  || |||| ||| ||||| ||| |||||| | |||| |||| |||||||| |||||| |||| || ||    
T  514615 ttgatttgagctattgtgataacatatctgacaaaagtatctgtcaagttttaaagagatggtctaagattaggcatttgaacttagcccactgctcaag 514714  T
Q  160 agtgaa 165  Q
    ||||||    
T  514715 agtgaa 514720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 1657438 - 1657374
Alignment:
Q  81 acatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaattta 145  Q
    ||||||||||||||||||||  | | ||| ||| || |||||||||  |||||||||||||||||    
T  1657438 acatatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaattta 1657374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 10614773 - 10614715
Alignment:
Q  92 gaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagccta 150  Q
    |||||||||||| ||||| |||||| |||||||||| |||| |||||||| ||||||||    
T  10614773 gaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagccta 10614715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 7977764 - 7977712
Alignment:
Q  86 tctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacattt 138  Q
    ||||||||||||||| || ||||| ||||||||||||||||  ||||||||||    
T  7977764 tctgaagaaggtattggtcaagttttaaggagatgttgtaacattagacattt 7977712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 41889463 - 41889617
Alignment:
Q  82 catatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttctagagtgaaactacttagaataaac 181  Q
    ||||| ||| |||||||||  | ||||| |||||| |||||||||  ||||| ||||||| ||| ||   ||||| | |||||| ||||||  ||| |||    
T  41889463 catatttgatgaaggtattactcaagttttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaac 41889562  T
Q  182 tttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatg 236  Q
    |||||||||||  |||| |||||||| ||||| ||| |||||   ||||||||||    
T  41889563 tttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatg 41889617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 1388 - 1440
Alignment:
Q  97 tatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcct 149  Q
    ||||||| ||||| |||||||||||| |||| ||||||||||||| |||||||    
T  1388 tatttgtcaagttttaaggagatgttataagattagacatttgaacttagcct 1440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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