View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_high_1 (Length: 734)
Name: NF0934_high_1
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 1379863 - 1380250
Alignment:
| Q |
1 |
tcccgcctctaaatccgattctctactctccctctccggtgacggcgtcaagattctaattgacgacttcgccggagacgtcacttcctccgatgagcgt |
100 |
Q |
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| T |
1379863 |
tcccgccgctaaatccgattctctactctccctctccggtgacggcgtcaagattctaattgacgacttcgccggagatgtcacttcctccgatgagcgt |
1379962 |
T |
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| Q |
101 |
atcgttgttattatctccgccgcggccgcggaatccgctgcacagcttgctttgattagggtttttgagagaatagtggagaaagataataatgaggaga |
200 |
Q |
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| T |
1379963 |
atcgttgttattatctccgccgcggccgaggaatccgctgcacagcttgctttgattagggtttttgagagaatagtggagaaagataataatgaggaga |
1380062 |
T |
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| Q |
201 |
ataataagaaatcgaattcttcggttgggtgtagattgttagctcctagttatcaggttgggtgtgtgcttggtagaggtggtaagattgttgaaaagat |
300 |
Q |
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| T |
1380063 |
ataataagaaatcgaattcttcggttgggtgtagattgttagctcctagttatcaggttgggtgtgtgcttggtagaggtggtaagattgttgaaaagat |
1380162 |
T |
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| Q |
301 |
taggcaagaaagtggtgctcaggttaggattttgcctaaagatcattctcctattcctcctcctggtgatgagttcattcaggtatta |
388 |
Q |
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| T |
1380163 |
taggcaagaaagtggtgctcaggttaggattttgcctaaagatcattctcctattcctcctcctggtgatgagttcattcaggtatta |
1380250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 731
Target Start/End: Original strand, 1380426 - 1380487
Alignment:
| Q |
670 |
agagagaaaacctgtagattgggtagaaaggacagtggattagagagagggtagttaaatta |
731 |
Q |
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| T |
1380426 |
agagagaaaacctgtagattttgtagtaaggacagtagattagatagagtgtagttaaatta |
1380487 |
T |
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