View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0934_high_2 (Length: 731)

Name: NF0934_high_2
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0934_high_2
NF0934_high_2
[»] chr2 (1 HSPs)
chr2 (30-731)||(36408538-36409240)


Alignment Details
Target: chr2 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 30 - 731
Target Start/End: Complemental strand, 36409240 - 36408538
Alignment:
Q  30 ctttctgcattaagataaggattcaaattagaattgccacaaaccagtaactaaagcatggatgccttttaattctaccacttccacttatgannnnnnn 129  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  36409240 ctttctgcattaagataaggattcaaagtagaattgccacaaaccagtaactaaagcatggatgccttttaattctaccacttccacttatgattttttt 36409141  T
Q  130 gtcatcactggaaaaagaaggttgaatgttcgattcattcgatacatttccggtctattctaggaaaatgtttggttctcatttagtcctctctcttatt 229  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36409140 gtcatcactggaaaaagaaggttgaatattcgattcattcgatatatttccggtctattctaggaaaatgtttggttctcatttagtcctctctcttatt 36409041  T
Q  230 gccttatcctaatatagcaatatacatacaaatgatccattgatgtgatatgattagtgagtatagctttcaacattttctgtgactctaaatttcatag 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36409040 gccttatcctaatatagcaatatacatacaaatgatccattgatgtgatatgattagtgagtatagctttcaacattttctgtgactctaaatttcatag 36408941  T
Q  330 ttgtgtggttttccatcctcctgatatttcccacctccataaaaatgccatcaatgggtctatttttgtggaccttgattgattcctccaaaatcaacca 429  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36408940 ttgtgtggttttccatcctcctgatatttcctacctccataaaaatgccatcaatgggtctatttttgtggaccttgattgattcctccaaaatcaacca 36408841  T
Q  430 tacagtattgtttatttcttttatgtttgtaaagttttaatttcactatcatggcccaatnnnnnnnnggttccactc-aaattaaacacgtagcatagt 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||| |||||||||||||||||||||    
T  36408840 tacagtattgtttatttcttttatgtttgtaaagttttaatttcactatcatggcccaataaaaaaaaggttccactcaaaattaaacacgtagcatagt 36408741  T
Q  529 atattaccaacttagctatgtaagaacatgtcaaacttattgtgaatgaaggaatcagatttcattacaatggtagtgtgatcataatattgatattatt 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36408740 atattaccaacttagctatgtaagaacatgtcaaacttattgtgaatgaaggaatcatatttcattacaatggtagtgtgatcataatattgatattatt 36408641  T
Q  629 gaaaaacagataagnnnnnnncttctgatagaatgagaaacagatataagttaaacaaacacgggaagtatagaaaacatactggaatgaatcacttcac 728  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36408640 gaaaaacagataagtttttttcttctgatagaatgagaaacagatataagttaaacaaacacaggaagtatagaaaacatactggaatgaatcacttcac 36408541  T
Q  729 aga 731  Q
    |||    
T  36408540 aga 36408538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University