View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0934_high_23 (Length: 230)
Name: NF0934_high_23
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41602758 - 41602551
Alignment:
| Q |
1 |
tttcttttttcacctacacatacaactttaatggagtgaaatcaatcaaataacccttcaatctgtgattttaaagtaaatttcaatggtattaggtttg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41602758 |
tttcttttttcaactacacatacaactttaatggagtaaaatcaatcaaataacccttcaatatgtgattttaaagtaaatttcaatggtattaggtttg |
41602659 |
T |
|
| Q |
101 |
aaaatttcaattttatatttgtaggaagaaaaggatagtccagtctttcaagatttaacacaaatcaacaaaacttcatcctgtcaccgccgcgtcggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41602658 |
aaaatttcaattttatatttgtaggaagaaaaggatagtccagtctttcaagatttaacacaaatcaacaaaacttcatcctgtcaccgccgcgtcggag |
41602559 |
T |
|
| Q |
201 |
aacccaat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
41602558 |
aacccaat |
41602551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 9470454 - 9470661
Alignment:
| Q |
1 |
tttcttttttcacctacacatacaactttaatggagtgaaatcaatcaaataacccttcaatctgtgattttaaagtaaatttcaatggtattaggtttg |
100 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9470454 |
tttctttttttaactacacatacaactttaatggagtaaaatcaatcaaataacccttcaatctttgattttaaagcaaatttcaatggtattaggtttg |
9470553 |
T |
|
| Q |
101 |
aaaatttcaattttatatttgtaggaagaaaaggatagtccagtctttcaagatttaacacaaatcaacaaaacttcatcctgtcaccgccgcgtcggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9470554 |
aaaatttcaattttatatttgtaggaagaaaaggatagtccagtctttcaagatttaacacaaatcaacaaaacttcatcctgtcactgccgcgtcggag |
9470653 |
T |
|
| Q |
201 |
aacccaat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
9470654 |
aacccaat |
9470661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 53721929 - 53721996
Alignment:
| Q |
16 |
acacatacaactttaatggagtgaaatcaatcaaataacccttcaatctgtgattttaaagtaaattt |
83 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
53721929 |
acacatacaactttaatggagcaaaatcaatcaaataacccttcaatctatgattttaaagcaaattt |
53721996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 7171988 - 7171921
Alignment:
| Q |
16 |
acacatacaactttaatggagtgaaatcaatcaaataacccttcaatctgtgattttaaagtaaattt |
83 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
7171988 |
acacatacaactttaatggagcaaaaccaatcaaataacccttcaatatgtgattttaaagcaaattt |
7171921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 9206725 - 9206658
Alignment:
| Q |
16 |
acacatacaactttaatggagtgaaatcaatcaaataacccttcaatctgtgattttaaagtaaattt |
83 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
9206725 |
acacatgcaactttaatggagcaaaatcaataaaataacccttcaatatgtgattttaaagcaaattt |
9206658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 42189296 - 42189361
Alignment:
| Q |
18 |
acatacaactttaatggagtgaaatcaatcaaataacccttcaatctgtgattttaaagtaaattt |
83 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
42189296 |
acatgcaactttaatggaacaaaaccaatcaaataacccttcaatctatgaatttaaagcaaattt |
42189361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University