View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_high_3 (Length: 584)
Name: NF0934_high_3
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 93 - 535
Target Start/End: Complemental strand, 436935 - 436480
Alignment:
| Q |
93 |
gatggaaaactgaaagctgcagttacttctttccatcttctctctttcataagctgtaacacaaattgctataaagataaggatattatgcaatcaccaa |
192 |
Q |
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| T |
436935 |
gatggaaaactgaaagctgcagttacttctttccatcttctctctttcataagctgtaacacaaattgctataaagataaggatattatgcaatcaccaa |
436836 |
T |
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| Q |
193 |
aaattatatatgtaattctttccgatctttgtacaaatcaatagggatgattaatatgatataaactttcatctctgaaaacaagtttaggtgattcgaa |
292 |
Q |
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| T |
436835 |
aaattatatatgtaattctttccgatctttgtacaaatcaatagggatgattaatatgatataaactttcatctatgaaaacaagtttaggcgatttgaa |
436736 |
T |
|
| Q |
293 |
tcctatagactcatcagggtcagggcaagcctcgaggctcaatgaactactgagtgctgacaaaggtacttaaa-attattcaccaatgataactttacg |
391 |
Q |
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| T |
436735 |
tcctatagactcatcagggtcagggcaagcctcgaggctcaatgaactactgagtgctgacaaaggtacttaaatattattcaccaacgatgtctttacg |
436636 |
T |
|
| Q |
392 |
ctagcag-------tgaa---aagcctttgcggggc--atgactcaatttcatactagttggaccaatcttcgttgaccgatataatccttcaacccaac |
479 |
Q |
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||| ||| |||| | ||||||||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
436635 |
ctaacagcgagagttgaactcacgcctttgcggggcatatgactcaattccttactagttggaccaatcttcgttgactgatataatttttcaatccaac |
436536 |
T |
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| Q |
480 |
agcgaattatgtaaaatatatatcagcaaggaaattattgagcgttgtaacactac |
535 |
Q |
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| T |
436535 |
atcgaattttctaaaatatatatcgtctatgaaattattgagcgttgtaatactac |
436480 |
T |
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