View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_low_1 (Length: 887)
Name: NF0934_low_1
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_low_1 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 102 - 451
Target Start/End: Complemental strand, 8087818 - 8087450
Alignment:
| Q |
102 |
catacatgtgtattttccattttccaacttgcaaactttggtacagtctttacatccatgaaacgtctatccatatcgggtggcattcaattttttatct |
201 |
Q |
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| T |
8087818 |
catacatgtgtattttccattttccaagttgcaaactttggtacagtctttacatccatcatacgtctatccatatcgggtggcattcaattttttatct |
8087719 |
T |
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| Q |
202 |
ctgcaatagtgacatagatggtttcctgaaataataaacaaattaagaaatgatatgttcaacaatagtagaaattgaatgatataca------------ |
289 |
Q |
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| T |
8087718 |
ctgcaatagtgacatagatggtttcgtgaaataataaacaaattaagaaatgatatgttcaacaatagtagaaattgaatgatatataatgtataaatta |
8087619 |
T |
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| Q |
290 |
-------atgtatgaaattagcaacaacgatacatacattctggattttattgatttctgaagnnnnnnnctcaaaaatgtaactatggacatgatatca |
382 |
Q |
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| T |
8087618 |
aacaatgatgtatgaaattagtaacaacgatacatacattctggattttatttatttctgaagaaaaaaactcagaaatgtaactatggacatgatatta |
8087519 |
T |
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| Q |
383 |
ggtggtagtgaaaattgagaaccttgagtaaatcaggaagcactctgagttggagcatcattgtcaatt |
451 |
Q |
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| T |
8087518 |
ggtggttgtgaaaattgagaaccttgagtaaatcaggaagcactctgagttggagcatcattatcaatt |
8087450 |
T |
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Target: scaffold0050 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 823 - 881
Target Start/End: Original strand, 8131 - 8189
Alignment:
| Q |
823 |
gtacataactaatgacagccgatttagaaataaaaatttcttccactcattcatctcac |
881 |
Q |
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| T |
8131 |
gtacataactaatgacaaccaatttagaaataaaaatttcttccactcattcatttcac |
8189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 675 - 741
Target Start/End: Original strand, 29500350 - 29500416
Alignment:
| Q |
675 |
gattattctacatctcatttccacttattttaaaatatattactgatattacttccatgtttatttt |
741 |
Q |
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| T |
29500350 |
gattattctatatctcatttccatttatgtgaaaataaattactgacataacttccatgtttatttt |
29500416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 692 - 753
Target Start/End: Complemental strand, 24779252 - 24779190
Alignment:
| Q |
692 |
tttccacttattttaaaatatattactgatattacttccatgttta-ttttcgttatttattt |
753 |
Q |
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| T |
24779252 |
tttccatttattttaaaataaactattgaaattacttccatgtttatttttcgttatatattt |
24779190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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