View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0934_low_10 (Length: 455)

Name: NF0934_low_10
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0934_low_10
NF0934_low_10
[»] chr5 (5 HSPs)
chr5 (96-440)||(41349474-41349820)
chr5 (96-186)||(31201497-31201587)
chr5 (286-416)||(31201276-31201406)
chr5 (286-403)||(31161485-31161602)
chr5 (132-236)||(31161720-31161825)
[»] chr3 (4 HSPs)
chr3 (286-440)||(25793936-25794090)
chr3 (96-198)||(4314652-4314755)
chr3 (132-236)||(25794131-25794234)
chr3 (286-370)||(4314831-4314915)
[»] chr4 (1 HSPs)
chr4 (108-182)||(17183098-17183172)
[»] chr6 (1 HSPs)
chr6 (124-184)||(2328552-2328612)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 96 - 440
Target Start/End: Original strand, 41349474 - 41349820
Alignment:
Q  96 cttgaatggcaacttctctggagatattatattgcctcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaactatatgcaaaaata 195  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41349474 cttgaatggcaacttctctagagatattatattgcctcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaactatatgcaaaaata 41349573  T
Q  196 atacttcatgtaaatgttcacatcatttgaataaaaacaaaatatattgcaaagaagaaactttgaaatgct---tnnnnnnnnnnnnnnnnncctcatt 292  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |   |                 |||| ||    
T  41349574 atacttcatgtaaatgttcacatcatttgaataaaaac-aaatatattgcaaagaagatagtttgaaatgttatatatatatatatatatatacctcgtt 41349672  T
Q  293 ggatacaatatcattcattatcctgcaaaggacaatagcagcattaataatttttggctcatttgatacccacttgaatatgtcctctgtaattgtgtct 392  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  41349673 ggatacaatatcatccattatcctgcaaaggacaatagcagcattaataatttttgactcatttgatacccatttgaatatgtcctctgtaactgtgtct 41349772  T
Q  393 cccataccaatataacaagttgttgttaacagtgcgtaaccagatgat 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41349773 cccataccaatataacaagttgttgttaacagtgcgtaaccagatgat 41349820  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 31201587 - 31201497
Alignment:
Q  96 cttgaatggcaacttctctggagatattatattgcctcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaactatat 186  Q
    ||||||||||| |||| || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  31201587 cttgaatggcagcttccctagagacattatattgcctcatatagcattccaagaatgaggtaacatgttctctttcttgttcaaactatat 31201497  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 286 - 416
Target Start/End: Complemental strand, 31201406 - 31201276
Alignment:
Q  286 cctcattggatacaatatcattcattatcctgcaaaggacaatagcagcattaataatttttggctcatttgatacccacttgaatatgtcctctgtaat 385  Q
    |||||||||| ||||| |||| ||||| ||| | || || ||| ||||||||||||| |||||| |||||||||||||||||||| |||||||||||       
T  31201406 cctcattggacacaatgtcatccattaaccttccaatgataattgcagcattaataacttttggatcatttgatacccacttgaagatgtcctctgtggc 31201307  T
Q  386 tgtgtctcccataccaatataacaagttgtt 416  Q
    | |||||||||| ||||||||||||||||||    
T  31201306 tatgtctcccattccaatataacaagttgtt 31201276  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 286 - 403
Target Start/End: Complemental strand, 31161602 - 31161485
Alignment:
Q  286 cctcattggatacaatatcattcattatcctgcaaaggacaatagcagcattaataatttttggctcatttgatacccacttgaatatgtcctctgtaat 385  Q
    ||||||||||| |||| |||| ||||||||||| ||  |||||||||||||||| ||||||||  |||||||||||||||||||  || ||||||||  |    
T  31161602 cctcattggatgcaatgtcatccattatcctgccaataacaatagcagcattaacaatttttgtttcatttgatacccacttgatgatctcctctgtggt 31161503  T
Q  386 tgtgtctcccataccaat 403  Q
    | |||||||||| |||||    
T  31161502 tatgtctcccatgccaat 31161485  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 31161825 - 31161720
Alignment:
Q  132 tcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaactatatgcaa-aaataatacttcatgtaaatgttcacatcatttgaataaa 230  Q
    |||| |||||||||||||||||||| | |||||||||||| |||||||||||||| |||  ||||||| |||| |||||| || || ||  |||||| ||    
T  31161825 tcatgtagcattccaagaatgaggacatatgttctcttttctgttcaaactatatacaacgaataataattcaagtaaatttttacttccattgaattaa 31161726  T
Q  231 aacaaa 236  Q
    ||||||    
T  31161725 aacaaa 31161720  T

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Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 286 - 440
Target Start/End: Complemental strand, 25794090 - 25793936
Alignment:
Q  286 cctcattggatacaatatcattcattatcctgcaaaggacaatagcagcattaataatttttggctcatttgatacccacttgaatatgtcctctgtaat 385  Q
    |||||||||| ||||| |||| ||||| ||||||||| |||| || |||||||| |||||||||||||||||||| ||||||||| ||||| |||||       
T  25794090 cctcattggacacaatgtcatccattagcctgcaaagtacaacagaagcattaagaatttttggctcatttgatatccacttgaagatgtcttctgtggc 25793991  T
Q  386 tgtgtctcccataccaatataacaagttgttgttaacagtgcgtaaccagatgat 440  Q
    |||| ||||||||||||| ||| ||||||| || | |||||| ||||||||||||    
T  25793990 tgtggctcccataccaatgtaagaagttgtggtcaccagtgcataaccagatgat 25793936  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 4314652 - 4314755
Alignment:
Q  96 cttgaatggcaacttctctggagatattatattgcctcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaactatatgcaa-aaat 194  Q
    ||||||||||| ||||||| |||||||||| |||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||    
T  4314652 cttgaatggcaccttctctagagatattatgttgcttcatatagcattccaagaatgaagaaacatgatctcttttttattcaaactatatgcaacaaat 4314751  T
Q  195 aata 198  Q
    ||||    
T  4314752 aata 4314755  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 25794234 - 25794131
Alignment:
Q  132 tcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaactatatgcaa-aaataatacttcatgtaaatgttcacatcatttgaataaa 230  Q
    ||||||| || |||| ||||||||||||||||||||||||||||||||||  ||||||| ||  |||| |||||||||||||  ||||||||||||| ||    
T  25794234 tcatataacactccaggaatgaggaaacatgttctcttttttgttcaaac--tatgcaacaagaaataattcatgtaaatgtctacatcatttgaattaa 25794137  T
Q  231 aacaaa 236  Q
    ||||||    
T  25794136 aacaaa 25794131  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 4314831 - 4314915
Alignment:
Q  286 cctcattggatacaatatcattcattatcctgcaaaggacaatagcagcattaataatttttggctcatttgatacccacttgaa 370  Q
    |||| |||||| ||||||||| ||||| ||||||||||| |||||||||||| || ||||||    |||||||||||||||||||    
T  4314831 cctcgttggatgcaatatcatccattagcctgcaaaggataatagcagcattgatcatttttattccatttgatacccacttgaa 4314915  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 17183172 - 17183098
Alignment:
Q  108 cttctctggagatattatattgcctcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaact 182  Q
    ||||||| || ||||| |||| | |||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  17183172 cttctctagatatattgtattccttcatatagcattccaagaatgaggaaacatgtcctcttttatgttcaaact 17183098  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 2328612 - 2328552
Alignment:
Q  124 atattgcctcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaactat 184  Q
    ||||||| |||||||||| ||||  |||||| |||||||| |||||||  |||||||||||    
T  2328612 atattgcttcatatagcaatccagcaatgagcaaacatgtcctcttttacgttcaaactat 2328552  T

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