View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_low_11 (Length: 449)
Name: NF0934_low_11
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 30 - 436
Target Start/End: Original strand, 11312538 - 11312944
Alignment:
| Q |
30 |
atatcgacctactggagtaaaacctcttccttgagagttaaagtgacctctaccgccaagtccgcttcgacctcgacctcttcctctttgactaaagaaa |
129 |
Q |
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| T |
11312538 |
atatcgacctgctggagtaaaacctcttccttgagagttaaagtgacctctaccgccacgtccgcttcgacctcgacctcttcctctttgactaaagaaa |
11312637 |
T |
|
| Q |
130 |
gcttgagcatgctctattaagctcttctcttcttccttttgggcattttgtatctgctcatgtccttgaggagctaatagaaactgactgaatgaagggt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11312638 |
gcttgagcatgctctattaagctcttctcttcttccttttgggcattttgtatctgctcatgtccttgaagagctaatagaaactgactgaatgaagggt |
11312737 |
T |
|
| Q |
230 |
aaggcggtttagtaagcatagcaacacgaaaagtttcatagcttggtccaagtccataagcaaattgaaacactttgtcttggtctgaaaccgtttcttt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
11312738 |
aaggcggtttagtaagcatagcaacacgaaaagtttcatagcttggtccaagtccataagcaaattgaaacactttgtcttggtcagaaaccggttcttt |
11312837 |
T |
|
| Q |
330 |
tatagcagcaagattgtcacaaattgatttgaattcgcgtagatattcttcaagggttcgtgacccctttttgattgtcatcaacatgttcttcaaactt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11312838 |
tatagcagcaagattgtcacaaattgatttgaattcgcgtagatattcttcaagggttcgtgacccctttttgattgtcatcaacatgttcttcaaactt |
11312937 |
T |
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| Q |
430 |
cgtgcct |
436 |
Q |
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| T |
11312938 |
cgtgcct |
11312944 |
T |
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