View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_low_14 (Length: 426)
Name: NF0934_low_14
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 81 - 402
Target Start/End: Complemental strand, 2927476 - 2927155
Alignment:
| Q |
81 |
attattctgtacttattggttattatttcctcttccaacaacattattcaggaaatcacaaagttgttttttcctgtgatgttataaataatttctttgt |
180 |
Q |
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| T |
2927476 |
attattttgtacttattggttattatttcctcttccaacaacattattcaggaaatcacaaagttgttttttcctgtgatgttataaataatttctttgt |
2927377 |
T |
|
| Q |
181 |
agtattttgcaattaatatctgtcaataacctgtattttaaatttccaagttgttctatgatcacgtctgagtaatgcttttctctctcacgttttcaag |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2927376 |
agtattttgcaattaatatctgtcaataacctgtattttaaatttccaagttgttctatgatcacgtctgagtaatgcttttctctctcacgttttcaag |
2927277 |
T |
|
| Q |
281 |
ccttgtaaaagtgtagtaacagtatttggataagtgttttatcaaccttcgatcatttaattcataaactaaacgtactttatcttgtagagatcaaacc |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2927276 |
ccttgtaaaagtgtagtaacagtatttggataagtgttttatcaaccttcgatcatttaattcataaactaaacgtactttatcttgtagagatcaaacc |
2927177 |
T |
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| Q |
381 |
ttgatcatctcatctataaact |
402 |
Q |
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|||||||||||||||||||||| |
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| T |
2927176 |
ttgatcatctcatctataaact |
2927155 |
T |
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