View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0934_low_17 (Length: 415)

Name: NF0934_low_17
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0934_low_17
NF0934_low_17
[»] chr8 (1 HSPs)
chr8 (83-273)||(7420870-7421060)
[»] chr2 (3 HSPs)
chr2 (279-355)||(17328627-17328704)
chr2 (284-363)||(35298361-35298440)
chr2 (286-355)||(40498509-40498578)
[»] chr3 (5 HSPs)
chr3 (246-355)||(27164152-27164263)
chr3 (286-355)||(2111352-2111421)
chr3 (287-363)||(20619191-20619267)
chr3 (184-288)||(29772680-29772784)
chr3 (286-355)||(43471705-43471774)
[»] chr1 (1 HSPs)
chr1 (287-343)||(14286948-14287004)
[»] chr4 (1 HSPs)
chr4 (279-357)||(1052290-1052369)
[»] chr6 (1 HSPs)
chr6 (247-355)||(2988253-2988363)
[»] chr7 (3 HSPs)
chr7 (279-355)||(2185863-2185940)
chr7 (286-355)||(34471689-34471758)
chr7 (287-343)||(45492087-45492143)
[»] chr5 (1 HSPs)
chr5 (286-355)||(7057031-7057100)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 83 - 273
Target Start/End: Complemental strand, 7421060 - 7420870
Alignment:
Q  83 cttcagtaagattattgtttaattgagnnnnnnncttgtaagattctaacgatgcacattcgcaattgacatataaggg-gacttatgaagcctaaatac 181  Q
    |||||||||||||||||||||||||||        || ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  7421060 cttcagtaagattattgtttaattgagttttttttttttaagattctaacgatgcacattcgcaattgacatataagggagatttatgaagc-taaatac 7420962  T
Q  182 atcaaatatggagatatatccatatcagatattaatactttgcggatactcactgatacatgcatacaaaatatcagaattaatttttaaaa 273  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||    
T  7420961 atcaaatatggagatatatccatattagatattaatactttgcggatattcactgatacatgcatacgaaatatcaaaattaatttttaaaa 7420870  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 355
Target Start/End: Original strand, 17328627 - 17328704
Alignment:
Q  279 aaaaatat-ttatcggatatttataggatactccatagagagacactgatacttatatgatacttcatatatacgtat 355  Q
    |||||||| |||||||||| ||||| ||||||||||||| | ||| ||||||||||| ||||||||| ||||| ||||    
T  17328627 aaaaatatattatcggatacttatatgatactccatagatacacaatgatacttataagatacttcacatatatgtat 17328704  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 363
Target Start/End: Original strand, 35298361 - 35298440
Alignment:
Q  284 tatttatcggatatttataggatactccatagagagacactgatacttatatgatacttcatatatacgtattttagaaa 363  Q
    ||||| ||||||| ||||| ||||||||| ||| | |||  |||| ||||| ||||||||| ||||||||||| ||||||    
T  35298361 tatttttcggatacttatatgatactccacagatacacaaagatatttataagatacttcacatatacgtattctagaaa 35298440  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 40498509 - 40498578
Alignment:
Q  286 tttatcggatatttataggatactccatagagagacactgatacttatatgatacttcatatatacgtat 355  Q
    |||| |||||| ||||| |||||||| |||| | |||  |||| ||||| ||||||||||||||||||||    
T  40498509 tttaacggatacttataagatactccgtagatacacaaggatatttataagatacttcatatatacgtat 40498578  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 355
Target Start/End: Complemental strand, 27164263 - 27164152
Alignment:
Q  246 tacaaaatatcagaattaatttttaaaaattttaaaa-atattt-atcggatatttataggatactccatagagagacactgatacttatatgatacttc 343  Q
    |||||| |||| ||||||||| || | | |||||||| |||||| ||| |||| |||| |||||||||||||| | |||  |||||||||| ||||||||    
T  27164263 tacaaagtatcggaattaattatttacatttttaaaatatattttatctgatacttattggatactccatagatacacaaggatacttataagatacttc 27164164  T
Q  344 atatatacgtat 355  Q
    | ||||||||||    
T  27164163 acatatacgtat 27164152  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 2111352 - 2111421
Alignment:
Q  286 tttatcggatatttataggatactccatagagagacactgatacttatatgatacttcatatatacgtat 355  Q
    ||||||||||| ||||| ||||||| ||||| | |||| |||||||||| ||||||||||| | ||||||    
T  2111352 tttatcggatacttataagatactcgatagatacacacagatacttataagatacttcatagagacgtat 2111421  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 20619191 - 20619267
Alignment:
Q  287 ttatcggatatttataggatactccatagagagacactgatacttatatgatacttcatatatacgtattttagaaa 363  Q
    |||||| |||| |||||||||||||||||| | |||  |||| ||||| ||||||||| ||||| ||||| ||||||    
T  20619191 ttatcgaatatgtataggatactccatagatacacaaggatatttataagatacttcaaatatatgtattctagaaa 20619267  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 29772680 - 29772784
Alignment:
Q  184 caaatatggagatatatccatatcagatattaatactttgcggatactcactgatacatgcatacaaaatatcagaattaatttttaaaaattttaaaaa 283  Q
    |||| |||||||  |||| |||| |||||| ||||||| | |||||||  | |||||||    ||||| ||| ||||||||||||||||| |||||||||    
T  29772680 caaacatggagacgtatcgatattagatatcaatacttcgtggatacttgcggatacatattcacaaagtattagaattaatttttaaaatttttaaaaa 29772779  T
Q  284 tattt 288  Q
    |||||    
T  29772780 tattt 29772784  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 43471705 - 43471774
Alignment:
Q  286 tttatcggatatttataggatactccatagagagacactgatacttatatgatacttcatatatacgtat 355  Q
    ||||||||||| ||||| ||||||| | ||| | |||| |||||||||| ||||||||||| | ||||||    
T  43471705 tttatcggatacttataagatactcgacagatacacacagatacttataagatacttcatagagacgtat 43471774  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 14286948 - 14287004
Alignment:
Q  287 ttatcggatatttataggatactccatagagagacactgatacttatatgatacttc 343  Q
    |||||||||| ||||| ||||||||||||| | ||| ||||||||||| ||||||||    
T  14286948 ttatcggatacttatatgatactccatagatacacaatgatacttataagatacttc 14287004  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 1052290 - 1052369
Alignment:
Q  279 aaaaatat-ttatcggatatttataggatactccatagagagacactgatacttatatgatacttcatatatacgtattt 357  Q
    |||||||| ||| |||||||||||| ||||||||  ||| | ||| ||||||||||| ||||||||| |||||| |||||    
T  1052290 aaaaatatattaacggatatttatacgatactccgcagatacacaatgatacttataagatacttcacatatacatattt 1052369  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 355
Target Start/End: Complemental strand, 2988363 - 2988253
Alignment:
Q  247 acaaaatatcagaattaatttttaaaaattttaaaaa-tattt-atcggatatttataggatactccatagagagacactgatacttatatgatacttca 344  Q
    ||||| |||||||||||||| || ||| ||||||||| ||||| | |||||| ||||| ||||||||  ||| | ||| ||||||||||| |||| ||||    
T  2988363 acaaagtatcagaattaattatttaaatttttaaaaaatattttaacggatacttatacgatactccgcagatacacaatgatacttataagatagttca 2988264  T
Q  345 tatatacgtat 355  Q
     | ||||||||    
T  2988263 caaatacgtat 2988253  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 355
Target Start/End: Complemental strand, 2185940 - 2185863
Alignment:
Q  279 aaaaatat-ttatcggatatttataggatactccatagagagacactgatacttatatgatacttcatatatacgtat 355  Q
    |||||||| |||||||||| ||||| ||||||||||| | | |||  |||||||||| ||||||||| ||||| ||||    
T  2185940 aaaaatatattatcggatacttatatgatactccatatatacacaaggatacttataagatacttcacatatatgtat 2185863  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 34471689 - 34471758
Alignment:
Q  286 tttatcggatatttataggatactccatagagagacactgatacttatatgatacttcatatatacgtat 355  Q
    |||||| |||| |||||||||||| |||||| | |||   ||||||||| ||||||||| ||||||||||    
T  34471689 tttatctgatacttataggatacttcatagatacacaagaatacttataagatacttcacatatacgtat 34471758  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 45492087 - 45492143
Alignment:
Q  287 ttatcggatatttataggatactccatagagagacactgatacttatatgatacttc 343  Q
    |||||||||| ||||| ||||||||||||  | ||| ||||||||||| ||||||||    
T  45492087 ttatcggatacttatatgatactccataggtacacaatgatacttataagatacttc 45492143  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 7057031 - 7057100
Alignment:
Q  286 tttatcggatatttataggatactccatagagagacactgatacttatatgatacttcatatatacgtat 355  Q
    |||||| |||| ||||||||||||||||||| | |||  |||||||||| ||| ||||| ||||| ||||    
T  7057031 tttatctgatacttataggatactccatagatacacaaggatacttataagatgcttcacatatatgtat 7057100  T

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