View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0934_low_18 (Length: 391)

Name: NF0934_low_18
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0934_low_18
NF0934_low_18
[»] chr6 (2 HSPs)
chr6 (8-362)||(18077011-18077365)
chr6 (131-347)||(18078931-18079146)
[»] chr1 (5 HSPs)
chr1 (121-362)||(51474322-51474563)
chr1 (121-350)||(51478534-51478763)
chr1 (8-101)||(51474610-51474703)
chr1 (187-350)||(51454352-51454515)
chr1 (51-95)||(51468115-51468159)
[»] chr5 (1 HSPs)
chr5 (248-302)||(43159819-43159873)


Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 18077365 - 18077011
Alignment:
Q  8 ccaagaatataattaaagattataaacctaaattgacatcaagaaaaatgagcaaattcaaatgactagatcctggtgatgaaattccactctaaagttc 107  Q
    |||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18077365 ccaaaaatataattaaagattataaacctaaatgtacatcaagaaaaatgagcaaattcaaatgactagatcctggtgatgaaattccactctaaagttc 18077266  T
Q  108 cnnnnnnnnnnnnctaccagcactcttcttctctttcatgacattttcctcaccctcttgtgcagcattattttcatcagaatccttagctgccatgtca 207  Q
    |            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  18077265 cttttttctttttctaccagcactcttcttctctttcatgacattttcctcaccctcttgtgcaacattgttttcatcagaatccttagcttccatgtca 18077166  T
Q  208 tcagcttcaacggaaccttcatcgtctgacgacaacaccaccactgtattggcgccaacatccatagtttgtttttctcgaccaggaacagattcaacag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18077165 tcagcttcaacggaaccttcatcgtctgacgacaacaccaccactgtattggcgccaacatccatagtttgtttttctcgaccaggaacagattcaacag 18077066  T
Q  308 ctgctgccgccacatcatcaccttcaccgtcgttcaacgacgctgattcagaact 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18077065 ctgctgccgccacatcatcaccttcaccgtcgttcaacgacgctgattcagaact 18077011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 131 - 347
Target Start/End: Complemental strand, 18079146 - 18078931
Alignment:
Q  131 tcttcttctctttcatgacattttcctcaccctcttgtgcagcattattttcatcagaatccttagctgccatgtcatcagcttcaacggaaccttcatc 230  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18079146 tcttcttcttttt-atgacattttcttcaccctcttgtgcagcattgttttcatcagaatccttagctgccatgtcatcagcttcaacagaaccttcatc 18079048  T
Q  231 gtctgacgacaacaccaccactgtattggcgccaacatccatagtttgtttttctcgaccaggaacagattcaacagctgctgccgccacatcatcacct 330  Q
    ||| | |||||||| || |||  | ||||||||||  ||||||| ||||||||||||| ||||| || ||||  || ||||||| ||||| || ||||||    
T  18079047 gtccgtcgacaacagcaacaccattttggcgccaaagtccatagcttgtttttctcgatcaggagcaaattcttcaactgctgctgccacgtcgtcacct 18078948  T
Q  331 tcaccgtcgttcaacga 347  Q
    ||| |||||||||||||    
T  18078947 tcagcgtcgttcaacga 18078931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 121 - 362
Target Start/End: Complemental strand, 51474563 - 51474322
Alignment:
Q  121 ctaccagcactcttcttctctttcatgacattttcctcaccctcttgtgcagcattattttcatcagaatccttagctgccatgtcatcagcttcaacgg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  51474563 ctaccagcactcttcttctctttcatgacattttcctcaccctcttgtgcaacattgttttcatcagaattcttagttgccatgtcatcagcttcaacgg 51474464  T
Q  221 aaccttcatcgtctgacgacaacaccaccactgtattggcgccaacatccatagtttgtttttctcgaccaggaacagattcaacagctgctgccgccac 320  Q
    ||||||||||||| || ||||||| ||||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||  |||||||||| |||||    
T  51474463 aaccttcatcgtccgatgacaacaacaccactgctttggcgccaacatccatagtttgtttttctcgatcaggaacatattcttcagctgctgctgccac 51474364  T
Q  321 atcatcaccttcaccgtcgttcaacgacgctgattcagaact 362  Q
    |||||||||||||||||| ||||||||| ||| |||||||||    
T  51474363 atcatcaccttcaccgtcattcaacgacactgtttcagaact 51474322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 121 - 350
Target Start/End: Complemental strand, 51478763 - 51478534
Alignment:
Q  121 ctaccagcactcttcttctctttcatgacattttcctcaccctcttgtgcagcattattttcatcagaatccttagctgccatgtcatcagcttcaacgg 220  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||| |    
T  51478763 ctaccagctctcttcttctctttcatgacattttcttcaccctcttgtgcagcattgttttcatcagaatccttagctgccatgctatcagcttcaacag 51478664  T
Q  221 aaccttcatcgtctgacgacaacaccaccactgtattggcgccaacatccatagtttgtttttctcgaccaggaacagattcaacagctgctgccgccac 320  Q
    |||| |||||||| | |||||||| |||||| || ||||  |||||||||||   ||||||| ||||| |||||||||||||  ||||| || || ||||    
T  51478663 aaccatcatcgtccgtcgacaacaacaccaccgttttgggtccaacatccatgtcttgttttcctcgatcaggaacagattcttcagctacttccaccac 51478564  T
Q  321 atcatcaccttcaccgtcgttcaacgacgc 350  Q
     ||||||| |||| |||| |||||||||||    
T  51478563 gtcatcacgttcatcgtccttcaacgacgc 51478534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 51474703 - 51474610
Alignment:
Q  8 ccaagaatataattaaagattataaacctaaattgacatcaagaaaaatgagcaaattcaaatgactagatcctggtgatgaaattccactcta 101  Q
    |||| ||||||| ||||||||  |||||||| |  |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  51474703 ccaaaaatataagtaaagattgcaaacctaagtgtacatcaagaaaaatgagcaacttcaaatgactagatcctggtgatgaaattcctctcta 51474610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 350
Target Start/End: Complemental strand, 51454515 - 51454352
Alignment:
Q  187 gaatccttagctgccatgtcatcagcttcaacggaaccttcatcgtctgacgacaacaccaccactgtattggcgccaacatccatagtttgtttttctc 286  Q
    |||||| ||||||| ||||||||| ||||||| ||||||||||||||   | ||| |  |||||| || ||||||||||||| ||| | |||||||||||    
T  51454515 gaatccctagctgcaatgtcatcaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctc 51454416  T
Q  287 gaccaggaacagattcaacagctgctgccgccacatcatcaccttcaccgtcgttcaacgacgc 350  Q
    || |||||| ||||||  |||||||| || |||| ||||||| |||| | || |||||||||||    
T  51454415 gatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgc 51454352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 51468159 - 51468115
Alignment:
Q  51 aaaaatgagcaaattcaaatgactagatcctggtgatgaaattcc 95  Q
    ||||| |||||  ||||||||||||||||||||||||| ||||||    
T  51468159 aaaaaagagcatcttcaaatgactagatcctggtgatgcaattcc 51468115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 43159873 - 43159819
Alignment:
Q  248 ccactgtattggcgccaacatccatagtttgtttttctcgaccaggaacagattc 302  Q
    |||| |||||||||||||||| ||||| |||||||||| || |||||||||||||    
T  43159873 ccaccgtattggcgccaacattcatagcttgtttttcttgatcaggaacagattc 43159819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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