View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0934_low_20 (Length: 376)

Name: NF0934_low_20
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0934_low_20
NF0934_low_20
[»] chr6 (22 HSPs)
chr6 (51-376)||(7132238-7132563)
chr6 (51-376)||(7135161-7135486)
chr6 (160-376)||(7138084-7138300)
chr6 (98-376)||(19633030-19633314)
chr6 (251-376)||(6423838-6423963)
chr6 (116-320)||(7993412-7993616)
chr6 (212-309)||(6417092-6417189)
chr6 (52-141)||(6593730-6593819)
chr6 (205-320)||(8913372-8913487)
chr6 (256-376)||(6596238-6596358)
chr6 (254-376)||(10579099-10579221)
chr6 (240-300)||(14809708-14809768)
chr6 (239-293)||(6410711-6410765)
chr6 (55-149)||(14821544-14821638)
chr6 (207-290)||(9412143-9412223)
chr6 (241-290)||(28935357-28935406)
chr6 (242-309)||(6593920-6593987)
chr6 (254-300)||(6395546-6395592)
chr6 (244-293)||(6427197-6427246)
chr6 (253-309)||(6403578-6403634)
chr6 (87-179)||(6602562-6602654)
chr6 (240-300)||(14821393-14821453)
[»] chr7 (3 HSPs)
chr7 (158-309)||(10615713-10615864)
chr7 (205-309)||(10169002-10169106)
chr7 (205-309)||(10176527-10176631)
[»] chr1 (4 HSPs)
chr1 (184-300)||(19467362-19467478)
chr1 (229-311)||(7555196-7555278)
chr1 (60-149)||(33161355-33161444)
chr1 (242-300)||(33161207-33161265)
[»] chr4 (15 HSPs)
chr4 (240-300)||(553768-553828)
chr4 (260-309)||(571330-571379)
chr4 (86-311)||(21833110-21833335)
chr4 (162-283)||(53760205-53760323)
chr4 (227-300)||(661867-661940)
chr4 (227-300)||(1755562-1755635)
chr4 (268-300)||(1547718-1547750)
chr4 (263-311)||(3437630-3437678)
chr4 (208-278)||(532773-532843)
chr4 (121-167)||(532878-532924)
chr4 (227-293)||(8186333-8186399)
chr4 (247-292)||(1545881-1545926)
chr4 (62-147)||(1546023-1546108)
chr4 (86-143)||(1552354-1552411)
chr4 (262-311)||(55907684-55907733)
[»] chr3 (3 HSPs)
chr3 (183-309)||(51763323-51763446)
chr3 (212-309)||(13469608-13469705)
chr3 (251-300)||(1657536-1657585)
[»] chr8 (8 HSPs)
chr8 (207-293)||(5766559-5766645)
chr8 (121-309)||(17642806-17642991)
chr8 (208-293)||(14004159-14004244)
chr8 (260-309)||(21236154-21236203)
chr8 (229-309)||(17635632-17635712)
chr8 (264-300)||(32151977-32152013)
chr8 (251-300)||(28246056-28246105)
chr8 (252-297)||(34935986-34936031)
[»] chr5 (3 HSPs)
chr5 (61-157)||(17205870-17205966)
chr5 (250-293)||(28532829-28532872)
chr5 (243-299)||(28661184-28661240)
[»] scaffold1155 (1 HSPs)
scaffold1155 (117-292)||(1753-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (117-292)||(8291-8463)
[»] scaffold0105 (1 HSPs)
scaffold0105 (117-292)||(30516-30688)
[»] chr2 (1 HSPs)
chr2 (262-311)||(1036620-1036669)


Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 51 - 376
Target Start/End: Complemental strand, 7132563 - 7132238
Alignment:
Q  51 cgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctca 150  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132563 cgaccgtcgtcgattctcactcatcgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctca 7132464  T
Q  151 aactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctg 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7132463 aactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctg 7132364  T
Q  251 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccga 350  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  7132363 caaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacatgtttctctacaacaacgatctgttacttattgccga 7132264  T
Q  351 ttgttttccaatgcttaaagaactca 376  Q
    ||||||||||||||||||||||||||    
T  7132263 ttgttttccaatgcttaaagaactca 7132238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 51 - 376
Target Start/End: Complemental strand, 7135486 - 7135161
Alignment:
Q  51 cgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctca 150  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7135486 cgaccgtcgtcgattctcactcatcgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctca 7135387  T
Q  151 aactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctg 250  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7135386 aactacaacgatgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctg 7135287  T
Q  251 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccga 350  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  7135286 caaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtgtctctacaacaacgatctgttacttattgccga 7135187  T
Q  351 ttgttttccaatgcttaaagaactca 376  Q
    ||||||||||||||  ||||||||||    
T  7135186 ttgttttccaatgcacaaagaactca 7135161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 160 - 376
Target Start/End: Complemental strand, 7138300 - 7138084
Alignment:
Q  160 ggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggt 259  Q
    |||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7138300 ggtgacctcgacatacttctccgcaaaatctctcatttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggt 7138201  T
Q  260 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttcc 359  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7138200 tgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtttctctacaacaacgatctgttacttattgccgattgttttcc 7138101  T
Q  360 aatgcttaaagaactca 376  Q
    |||||||||||||||||    
T  7138100 aatgcttaaagaactca 7138084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 376
Target Start/End: Complemental strand, 19633314 - 19633030
Alignment:
Q  98 tcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctccttt 197  Q
    |||||||||||||  ||| |||||| |||||||||| |||||| ||||||||| | | ||||  |||  |  ||   ||||| |  |||||||||| ||     
T  19633314 tcctcggtcgcctattcagaaggtttaccaacctcatctccctcgacctctcacaattcaaccatgatgtcaaccaccttctgcgtaaaatctctcgtta 19633215  T
Q  198 cccactaaagaaactcacatcccttagtatctc---caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgaca 294  Q
    |||| | |||||||||||||| ||| |||||||   |||||||  | |||||||  ||||||||||||||||||||||| ||| |||||||||||||||     
T  19633214 cccattgaagaaactcacatctctttgtatctctagcaaccaattcccctttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacc 19633115  T
Q  295 tctctcgattgttccaatacgtttctctacaacaacgatctgttact---tattgccgattgttttccaatgcttaaagaactca 376  Q
    ||||||  |||  |  | | |||||||||||||||||| ||||||||    |||||||||||||| ||| || | ||||||||||    
T  19633114 tctctcacttgcactcacatgtttctctacaacaacgaactgttactcaacattgccgattgtttcccattgttgaaagaactca 19633030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 251 - 376
Target Start/End: Complemental strand, 6423963 - 6423838
Alignment:
Q  251 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccga 350  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||  |||||  |  | |||||||| ||||| ||| ||||||||| | ||| |    
T  6423963 caaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgttatagcatgtttctctccaacaccgacctgttacttgtggccaa 6423864  T
Q  351 ttgttttccaatgcttaaagaactca 376  Q
    |||||| ||| |||| ||||||||||    
T  6423863 ttgtttcccattgctcaaagaactca 6423838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 320
Target Start/End: Original strand, 7993412 - 7993616
Alignment:
Q  116 aaaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcac 215  Q
    |||| ||||| ||||| ||||||||  ||||||| |||||| |  |||||||||||| | |||| |   |||||||| ||||||||  |  |||  ||||    
T  7993412 aaagattcactaaccttaactccctcaacctctcgaactaccattgtgaccttgacaagtttctgcgggaaatctctactttcccatcattgaacatcac 7993511  T
Q  216 atcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacg 315  Q
    |||||||| ||||||| |||||  || |||||| ||  |||| |||||||| ||  ||||||||||||||| |||||| |||||| |||||||||||||     
T  7993512 atcccttaatatctccgaccaatgcaactttcccgcctatggtttgcgagcatttgcccaaaacattacaattttgacctctctcaattgttccaatact 7993611  T
Q  316 tttct 320  Q
    |||||    
T  7993612 tttct 7993616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 309
Target Start/End: Complemental strand, 6417189 - 6417092
Alignment:
Q  212 tcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 309  Q
    ||||||| |||| |||||||||||||| ||| ||||| | ||||||||| ||||||||||||||||| | |||||||||||| ||||||  |||||||    
T  6417189 tcacatcacttaatatctccaaccaacccacttttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 6593730 - 6593819
Alignment:
Q  52 gaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactccctt 141  Q
    |||||||  ||||||||| || |||||||| ||| ||||  |||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  6593730 gaccgtctccgattctcaatctttgtcaaaaatggaacactccctttcctcggtcgcctcctcgaaaggttcaccaacctcaaatccctt 6593819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 320
Target Start/End: Original strand, 8913372 - 8913487
Alignment:
Q  205 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 304  Q
    |||||||||||||| || | |||||||||||||   ||||||||||| |||||||||| || ||| ||  |||| |||||||||||||| |||||| |||    
T  8913372 aagaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaatt 8913471  T
Q  305 gttccaatacgtttct 320  Q
    ||||||| | ||||||    
T  8913472 gttccaacatgtttct 8913487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 376
Target Start/End: Original strand, 6596238 - 6596358
Alignment:
Q  256 gggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgtt 355  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||  |||||| |  |  ||||||||||| || ||  ||||||| ||||| |||||||    
T  6596238 gggttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctataaactttctctacaaaaatgacttgttactcattgctgattgtt 6596337  T
Q  356 ttccaatgcttaaagaactca 376  Q
    | ||| |||| ||||||||||    
T  6596338 tcccattgctcaaagaactca 6596358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 376
Target Start/End: Original strand, 10579099 - 10579221
Alignment:
Q  254 atgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattg 353  Q
    ||||||| |||||||||||||||||||| ||||||||||||  | ||  |||||| | |   ||||||||||| || ||  |||||||  ||||||||||    
T  10579099 atgggttacgagctttctcccaaaacataacaactttgacaagtttcacttgttctactgactttctctacaaaaatgacttgttactcgttgccgattg 10579198  T
Q  354 ttttccaatgcttaaagaactca 376  Q
    ||| ||| |||| ||||||||||    
T  10579199 tttcccattgctcaaagaactca 10579221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 14809768 - 14809708
Alignment:
Q  240 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 300  Q
    ||||||||| ||||| ||||||| || ||||||||||||||||||||||||| | ||||||    
T  14809768 cacctttcccgcaaaagggttgcaagatttctcccaaaacattacaactttggcctctctc 14809708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 6410765 - 6410711
Alignment:
Q  239 acacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 293  Q
    ||||||||||   ||||||||||| || |||||||||||||||||||||||||||    
T  6410765 acacctttcccataaatgggttgcaagttttctcccaaaacattacaactttgac 6410711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 14821638 - 14821544
Alignment:
Q  55 cgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctc 149  Q
    |||| |||||| ||||| | | ||||||| |||||| |||||||||||  |   ||| ||||||||||||||||||||| |||||||||| ||||    
T  14821638 cgtcttcgattttcacttaatatcaaagaggcaacacgccctttcctcttttctctcttcaaaaggttcaccaacctcacctcccttgacttctc 14821544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 290
Target Start/End: Complemental strand, 9412223 - 9412143
Alignment:
Q  207 gaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 290  Q
    ||||||| |||| |||| | |||||||||| | |||| |||| ||   |||||||||||||||||||||||| |||||||||||    
T  9412223 gaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaacttt 9412143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 28935406 - 28935357
Alignment:
Q  241 acctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 290  Q
    ||||||||  |||| ||||||||||| |||||||||||||||||||||||    
T  28935406 acctttcccacaaaagggttgcgagccttctcccaaaacattacaacttt 28935357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 6593920 - 6593987
Alignment:
Q  242 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 309  Q
    |||||||  ||||||| ||||||| |||||| ||||| |||||||||||||| ||| || ||||||||    
T  6593920 cctttccctcaaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttcc 6593987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 6395592 - 6395546
Alignment:
Q  254 atgggttgcgagctttctcccaaaacattacaactttgacatctctc 300  Q
    ||||||||| |||| |||||||||| |||||||||||||| ||||||    
T  6395592 atgggttgcaagctctctcccaaaatattacaactttgacctctctc 6395546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 6427246 - 6427197
Alignment:
Q  244 tttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 293  Q
    ||||||| ||| ||||||| || |||||||||||| ||||||||||||||    
T  6427246 tttcctgtaaacgggttgcaagttttctcccaaaatattacaactttgac 6427197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 6403634 - 6403578
Alignment:
Q  253 aatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 309  Q
    |||||||||||||||||||||| |||  | || |||||||| ||||| |||||||||    
T  6403634 aatgggttgcgagctttctcccgaaaggtcactactttgacctctcttgattgttcc 6403578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 6602562 - 6602654
Alignment:
Q  87 aacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttct 179  Q
    |||| ||||||| || | ||||||| | |||||||||||  ||||||| ||||| ||| ||||| | ||| || ||||||| |||||||||||    
T  6602562 aacacgcccttttcttgatcgcctctttaaaaggttcacatacctcaattccctcgacatctcagaatacgacagtgacctggacatgcttct 6602654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 14821453 - 14821393
Alignment:
Q  240 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 300  Q
    ||||||||| ||||||||||||||  ||||||| |  ||| ||||||||||||| ||||||    
T  14821453 cacctttcccgcaaatgggttgcggactttctcacgtaacgttacaactttgacctctctc 14821393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 309
Target Start/End: Complemental strand, 10615864 - 10615713
Alignment:
Q  158 acggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgg 257  Q
    ||||||||||||||   ||||||| ||||||||||| |||||||  |  |||  ||||||| |||| ||| |||||||||| |||  |||| ||||||||    
T  10615864 acggtgaccttgacgctcttctccgcaaaatctctcgtttcccatcattgaacatcacatcacttaatatttccaaccaacccacagttcccgcaaatgg 10615765  T
Q  258 gttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 309  Q
    ||| ||||||||||||||||| |||||||||||||| ||||||  |||||||    
T  10615764 gttacgagctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 309
Target Start/End: Original strand, 10169002 - 10169106
Alignment:
Q  205 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 304  Q
    |||||||||||||| ||   ||| ||| |||||  |||| |||| |||||||||||||||| |||||| ||||| |||| ||||||||| ||||||  ||    
T  10169002 aagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcactt 10169101  T
Q  305 gttcc 309  Q
    |||||    
T  10169102 gttcc 10169106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 309
Target Start/End: Original strand, 10176527 - 10176631
Alignment:
Q  205 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 304  Q
    |||||||||||||| ||   ||| ||| |||||  |||| |||| |||||||||||||||| |||||| ||||| |||| ||||||||| ||||||  ||    
T  10176527 aagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcactt 10176626  T
Q  305 gttcc 309  Q
    |||||    
T  10176627 gttcc 10176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 19467362 - 19467478
Alignment:
Q  184 aaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacatta 283  Q
    |||||||||| ||||||| | || ||||||||||| || | ||||||||||  ||||||| |||| |||||||||||||||| |||| | ||||| ||||    
T  19467362 aaaatctctcatttcccattgaaaaaactcacatctctcattatctccaacagacacaccattcccgcaaatgggttgcgagttttcactcaaaatatta 19467461  T
Q  284 caactttgacatctctc 300  Q
    |||||||||| ||||||    
T  19467462 caactttgacctctctc 19467478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 7555278 - 7555196
Alignment:
Q  229 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 311  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| ||||||||||| || || |||  |||||||||    
T  7555278 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 33161444 - 33161355
Alignment:
Q  60 tcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctc 149  Q
    ||||||||||||||   ||||| |  |||||  ||||||||||  ||| ||| | ||||||||||||||||||| |||||||||||||||    
T  33161444 tcgattctcactcaccctcaaaaactcaacacaccctttcctccctcgtctcttgaaaaggttcaccaacctcacctcccttgacctctc 33161355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 33161265 - 33161207
Alignment:
Q  242 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 300  Q
    ||||||| || ||||| |||||| |||||||||||| ||||| ||||||||| ||||||    
T  33161265 cctttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctc 33161207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 553828 - 553768
Alignment:
Q  240 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 300  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  553828 caccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctc 553768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 571379 - 571330
Alignment:
Q  260 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 309  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  571379 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcc 571330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 311
Target Start/End: Original strand, 21833110 - 21833335
Alignment:
Q  86 caacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaa 185  Q
    ||||| ||||| || || ||| |||| ||||||| ||||||||||| | ||||||| |||||||   || | ||||||||||  |||  |||||||   |    
T  21833110 caacacgccctctcatccgtcccctcttcaaaagattcaccaaccttacctcccttaacctctctcgcttccacggtgacctcaacaaccttctccgtca 21833209  T
Q  186 aatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattaca 285  Q
    |||||||| |||||||  |  |||  |||  || || | |||||||||| ||| |||| |||| ||| |||||||||||| |||  | |||||||||||     
T  21833210 aatctctcgtttcccatcattgaacatcaagtcactcaatatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattact 21833309  T
Q  286 actttgacatctctcgattgttccaa 311  Q
    |||||||| ||||||  |||||||||    
T  21833310 actttgacctctctcacttgttccaa 21833335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 53760205 - 53760323
Alignment:
Q  162 tgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttg 261  Q
    ||||||||||| | |||| | || |||||||| ||||||| |   |||||||||||| || | | |||||||||||  |||  | | |||||||||||||    
T  53760205 tgaccttgacaaggttcttcgcagaatctctcgtttcccatt---gaaactcacatcactcaatctctccaaccaatccactatccatgcaaatgggttg 53760301  T
Q  262 cgagctttctcccaaaacatta 283  Q
    |||||||||| |||||||||||    
T  53760302 cgagctttcttccaaaacatta 53760323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 661940 - 661867
Alignment:
Q  227 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 300  Q
    |||||||||||  |||| |||| || ||||| |||||||||||||||||| | ||||||||||| || ||||||    
T  661940 tctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctc 661867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 1755635 - 1755562
Alignment:
Q  227 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 300  Q
    |||||||||||||| || ||||  | || ||||||| ||||||||| ||||| |||||||||||||| ||||||    
T  1755635 tctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaactttgacctctctc 1755562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 1547718 - 1547750
Alignment:
Q  268 ttctcccaaaacattacaactttgacatctctc 300  Q
    |||||||||||||||||||||||||||||||||    
T  1547718 ttctcccaaaacattacaactttgacatctctc 1547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 3437630 - 3437678
Alignment:
Q  263 gagctttctcccaaaacattacaactttgacatctctcgattgttccaa 311  Q
    |||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaa 3437678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 532843 - 532773
Alignment:
Q  208 aaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaa 278  Q
    ||||||||||| || | | |||| |||||||||||| |||| ||||||||||| ||||| |||||| ||||    
T  532843 aaactcacatcactcaatctctctaaccaacacaccattcccgcaaatgggttacgagccttctccaaaaa 532773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 532924 - 532878
Alignment:
Q  121 ttcaccaacctcaactcccttgacctctcaaactacaacggtgacct 167  Q
    ||||||||||||| ||||||||||||  ||| |||||||||||||||    
T  532924 ttcaccaacctcacctcccttgaccttacaagctacaacggtgacct 532878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 8186333 - 8186399
Alignment:
Q  227 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 293  Q
    |||| ||| ||| |||| ||||||||||||| ||||||| | |||||| ||| ||||||||||||||    
T  8186333 tctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgac 8186399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 1545926 - 1545881
Alignment:
Q  247 cctgcaaatgggttgcgagctttctcccaaaacattacaactttga 292  Q
    ||||| |||||||||||| ||||||| ||||| |||||||||||||    
T  1545926 cctgccaatgggttgcgatctttctctcaaaatattacaactttga 1545881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 1546108 - 1546023
Alignment:
Q  62 gattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctc 147  Q
    |||| ||||||||| ||| | || ||||| ||||||| ||   | ||||||||||||||||||||| ||||| ||||||| |||||    
T  1546108 gattgtcactcattatcagaaattcaacacgcccttttcttcattgcctcctcaaaaggttcaccagcctcacctcccttaacctc 1546023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 1552354 - 1552411
Alignment:
Q  86 caacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttga 143  Q
    ||||| ||||||||||| | | |||  ||||||||||| |||||||||||||||||||    
T  1552354 caacacgccctttcctccgccaccttttcaaaaggttctccaacctcaactcccttga 1552411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 55907684 - 55907733
Alignment:
Q  262 cgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 311  Q
    ||||||||||||||||| |||||||||||||  ||||||  |||||||||    
T  55907684 cgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 51763323 - 51763446
Alignment:
Q  183 caaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacatt 282  Q
    ||||||||||| ||||||| |   |||||||||||| |||| | ||||||| || |  ||||||||| ||||||||||||||| ||| || ||||| |||    
T  51763323 caaaatctctcgtttcccatt---gaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagatt 51763419  T
Q  283 acaactttgacatctctcgattgttcc 309  Q
    ||||||||||||||||||  |||||||    
T  51763420 acaactttgacatctctcacttgttcc 51763446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 309
Target Start/End: Original strand, 13469608 - 13469705
Alignment:
Q  212 tcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 309  Q
    ||||||| |||| | |||||||||||| |||  |||||||||||||||| ||||||||||||||||| | ||||||  |||| ||||||  |||||||    
T  13469608 tcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgttcc 13469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 1657585 - 1657536
Alignment:
Q  251 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 300  Q
    |||||||||||| ||||||||| |||||||||| |||||| || ||||||    
T  1657585 caaatgggttgcaagctttctctcaaaacattaaaactttaacctctctc 1657536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 5766559 - 5766645
Alignment:
Q  207 gaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 293  Q
    |||||||||||| || | | | |||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  5766559 gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgac 5766645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 309
Target Start/End: Original strand, 17642806 - 17642991
Alignment:
Q  121 ttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatccc 220  Q
    ||||||| ||||  |||||| ||||| ||| ||||||| ||||||||  ||| |||| || |||| ||||||  ||| ||| |   |||||||||||| |    
T  17642806 ttcaccagcctcgcctccctcgacctttcacactacaaaggtgacctaaacaagcttatcaacaagatctcttgttttccatt---gaaactcacatcac 17642902  T
Q  221 ttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 309  Q
    | | | |||||||||| | |||| ||||  | |||||||| | |||||||||||| || |||||||||||||| ||||||  |||||||    
T  17642903 tcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgttcc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 293
Target Start/End: Complemental strand, 14004244 - 14004159
Alignment:
Q  208 aaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 293  Q
    ||||||||||| || | | | |||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  14004244 aaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgac 14004159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 21236203 - 21236154
Alignment:
Q  260 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 309  Q
    ||||||| ||||||||||| | ||||||||||||||||||| ||||||||    
T  21236203 tgcgagcattctcccaaaatactacaactttgacatctctcaattgttcc 21236154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 17635632 - 17635712
Alignment:
Q  229 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 309  Q
    |||||||||| |||| ||||  | |||||||| |||||||||||||  || |||||||||||||| ||||||  |||||||    
T  17635632 tccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 32152013 - 32151977
Alignment:
Q  264 agctttctcccaaaacattacaactttgacatctctc 300  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctc 32151977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 28246056 - 28246105
Alignment:
Q  251 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 300  Q
    |||||||||||| ||||||||| |||||||||| |||||| || ||||||    
T  28246056 caaatgggttgcaagctttctctcaaaacattaaaactttaacctctctc 28246105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 34935986 - 34936031
Alignment:
Q  252 aaatgggttgcgagctttctcccaaaacattacaactttgacatct 297  Q
    |||||| ||||||| |||||| ||||| ||||||||||||||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgacatct 34936031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 17205966 - 17205870
Alignment:
Q  61 cgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactaca 157  Q
    ||||||||||||| |||| | |||  ||||  ||||||| | |||| |||| |||||||||||||||||||||  ||||||||| ||||| ||||||    
T  17205966 cgattctcactcactgtctatgatcaaacacaccctttctttggtcacctcttcaaaaggttcaccaacctcacatcccttgacttctcacactaca 17205870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 28532872 - 28532829
Alignment:
Q  250 gcaaatgggttgcgagctttctcccaaaacattacaactttgac 293  Q
    |||||||| ||||||||||| || ||||||||||||||||||||    
T  28532872 gcaaatggattgcgagctttttcacaaaacattacaactttgac 28532829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 28661184 - 28661240
Alignment:
Q  243 ctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctct 299  Q
    |||||| ||| |||| ||| ||||||||  ||||||||||||||||||||| |||||    
T  28661184 ctttcccgcacatggtttgggagctttcagccaaaacattacaactttgacctctct 28661240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 292
Target Start/End: Original strand, 1753 - 1925
Alignment:
Q  117 aaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcaca 216  Q
    ||||||||| ||||| | ||||||| |||||||    |||||| |||||||  || |||| |||||  ||||||||| ||||||| |   ||| ||||||    
T  1753 aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccatt---gaacctcaca 1849  T
Q  217 tcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttga 292  Q
    || || | | ||||| |||||| ||   |||| ||| |||||||||||| ||| |||||||| |||||||||||||    
T  1850 tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttga 1925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 292
Target Start/End: Complemental strand, 8463 - 8291
Alignment:
Q  117 aaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcaca 216  Q
    ||||||||| ||||| | ||||||| |||||||    |||||| |||||||  || |||| |||||  ||||||||| ||||||| |   ||| ||||||    
T  8463 aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccatt---gaacctcaca 8367  T
Q  217 tcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttga 292  Q
    || || | | ||||| |||||| ||   |||| ||| |||||||||||| ||| |||||||| |||||||||||||    
T  8366 tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttga 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 292
Target Start/End: Original strand, 30516 - 30688
Alignment:
Q  117 aaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcaca 216  Q
    ||||||||| ||||| | ||||||| |||||||    |||||| |||||||  || |||| |||||  ||||||||| ||||||| |   ||| ||||||    
T  30516 aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccatt---gaacctcaca 30612  T
Q  217 tcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttga 292  Q
    || || | | ||||| |||||| ||   |||| ||| |||||||||||| ||| |||||||| |||||||||||||    
T  30613 tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttga 30688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 1036620 - 1036669
Alignment:
Q  262 cgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 311  Q
    ||||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  1036620 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University