View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0934_low_22 (Length: 370)

Name: NF0934_low_22
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0934_low_22
NF0934_low_22
[»] chr3 (13 HSPs)
chr3 (202-359)||(9856434-9856591)
chr3 (1-88)||(9856704-9856791)
chr3 (289-341)||(17755844-17755896)
chr3 (289-341)||(19057164-19057216)
chr3 (289-341)||(9240746-9240798)
chr3 (289-341)||(25716844-25716896)
chr3 (289-340)||(25937844-25937895)
chr3 (227-285)||(9240859-9240917)
chr3 (225-285)||(5565074-5565134)
chr3 (231-281)||(9241009-9241059)
chr3 (231-285)||(17755736-17755790)
chr3 (231-285)||(19057056-19057110)
chr3 (225-269)||(837271-837315)
[»] chr8 (8 HSPs)
chr8 (286-341)||(13461805-13461860)
chr8 (289-341)||(38294910-38294962)
chr8 (226-283)||(604382-604439)
chr8 (286-321)||(38294969-38295004)
chr8 (226-283)||(604557-604614)
chr8 (236-285)||(13461879-13461928)
chr8 (236-285)||(31249373-31249422)
chr8 (289-341)||(39616915-39616967)
[»] chr5 (4 HSPs)
chr5 (289-341)||(7779559-7779611)
chr5 (226-285)||(7779439-7779498)
chr5 (226-285)||(14854327-14854386)
chr5 (236-285)||(3432999-3433048)
[»] chr7 (11 HSPs)
chr7 (227-285)||(4455363-4455421)
chr7 (289-341)||(16377562-16377614)
chr7 (289-341)||(4455482-4455534)
chr7 (289-341)||(16376422-16376474)
chr7 (289-339)||(5553812-5553862)
chr7 (226-282)||(4454919-4454975)
chr7 (226-269)||(23591481-23591524)
chr7 (226-285)||(38694861-38694920)
chr7 (291-341)||(24788724-24788774)
chr7 (236-285)||(16377478-16377527)
chr7 (289-321)||(5553869-5553901)
[»] scaffold0090 (1 HSPs)
scaffold0090 (289-341)||(12418-12470)
[»] chr2 (15 HSPs)
chr2 (289-341)||(17930418-17930470)
chr2 (283-340)||(41075759-41075816)
chr2 (283-340)||(41076324-41076381)
chr2 (289-341)||(11131355-11131407)
chr2 (227-285)||(15255830-15255888)
chr2 (289-341)||(38857747-38857799)
chr2 (225-285)||(41076470-41076530)
chr2 (226-269)||(29550128-29550171)
chr2 (226-285)||(38857854-38857913)
chr2 (293-340)||(41076042-41076089)
chr2 (227-269)||(3249867-3249909)
chr2 (227-281)||(17930535-17930589)
chr2 (286-318)||(11131313-11131345)
chr2 (289-341)||(15256501-15256553)
chr2 (286-322)||(17930476-17930512)
[»] chr6 (15 HSPs)
chr6 (287-341)||(12296005-12296059)
chr6 (290-340)||(17201476-17201526)
chr6 (289-341)||(24223463-24223515)
chr6 (225-285)||(24223576-24223636)
chr6 (227-285)||(12295927-12295985)
chr6 (291-341)||(17079943-17079993)
chr6 (227-283)||(17199982-17200038)
chr6 (289-341)||(24223108-24223160)
chr6 (226-285)||(16799563-16799622)
chr6 (286-321)||(17200571-17200606)
chr6 (238-285)||(17203662-17203709)
chr6 (289-339)||(6601875-6601925)
chr6 (287-321)||(16799510-16799544)
chr6 (227-285)||(17200320-17200378)
chr6 (226-283)||(24223211-24223268)
[»] chr4 (6 HSPs)
chr4 (289-339)||(19553377-19553427)
chr4 (223-285)||(46883329-46883391)
chr4 (290-341)||(9711335-9711385)
chr4 (289-336)||(29013796-29013843)
chr4 (226-281)||(47428297-47428352)
chr4 (286-340)||(46883410-46883466)
[»] chr1 (8 HSPs)
chr1 (289-341)||(11928311-11928363)
chr1 (289-341)||(41460966-41461018)
chr1 (289-341)||(49484051-49484103)
chr1 (289-340)||(52740982-52741033)
chr1 (289-341)||(46533030-46533082)
chr1 (299-341)||(23482588-23482630)
chr1 (226-267)||(6537500-6537541)
chr1 (289-341)||(41462629-41462681)
[»] scaffold0368 (1 HSPs)
scaffold0368 (289-336)||(279-326)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 202 - 359
Target Start/End: Complemental strand, 9856591 - 9856434
Alignment:
Q  202 aaaggattatttcaaaatattttgtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaacagcaatttaacctaa 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  9856591 aaaggattatttcaaaatattttgtatccttatctattaattttattagatctgtaacaacttaacctaataatttccctctaacagcaatttaatctaa 9856492  T
Q  302 caaatttcctctaaaatgcaaaaatccctaatatttctccgatgagctttttattcat 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9856491 caaatttcctctaaaatgcaaaaatccctaatatttctccgatgagcttttcattcat 9856434  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 9856791 - 9856704
Alignment:
Q  1 tttaaagtgataggtacagaataaatctttcttttcagaggtgtacggagtaaatcttgggaatcaagtatgaggattttgtattgga 88  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9856791 tttaaagtgataggtacaaaataaatcttttttttcagaggtgtacggagtaaatcttgggaatcaagtatgaggattttgtattgga 9856704  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 17755844 - 17755896
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  17755844 caatttaacctaacaaatttcctctaaaatgcagcaatccctaatatttctcc 17755896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 19057164 - 19057216
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  19057164 caatttaacctaacaaatttcctctaaaatgcagcaatccctaatatttctcc 19057216  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 9240798 - 9240746
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  9240798 caatttaacctaacaaatttcctcaaaaatgcagcaatccctaatatttctcc 9240746  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 25716896 - 25716844
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||| |||||||||| |||||||||||||  ||||||||||||||||||    
T  25716896 caatttaagctaacaaattccctctaaaatgcagcaatccctaatatttctcc 25716844  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 25937844 - 25937895
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 340  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||||||||||    
T  25937844 caatttaacctaacaaattccctctaacatgcagcaatccctaatatttctc 25937895  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 9240917 - 9240859
Alignment:
Q  227 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||||||| ||||||||||||||  |||| ||||| ||||||| |||||||||||||||    
T  9240917 atccttatttattaattttattacgtctgcaacaacttaacctaataatttccctctaa 9240859  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 5565074 - 5565134
Alignment:
Q  225 gtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||||||||  ||||||||||||||| |||| ||||| ||||||| ||| |||||||||||    
T  5565074 gtatccttaattattaattttattaggtctgcaacaacttaacctaatattttccctctaa 5565134  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 9241059 - 9241009
Alignment:
Q  231 ttatctattaattttattagatctgtaacaatttaaccttataatttccct 281  Q
    |||| ||||||||||||||| |||| ||||| ||||||| |||||||||||    
T  9241059 ttatttattaattttattagctctgcaacaacttaacctaataatttccct 9241009  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 17755736 - 17755790
Alignment:
Q  231 ttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||| ||||||||||||||| || | | ||||||||||| |||||||||||||||    
T  17755736 ttatttattaattttattaggtccgcagcaatttaacctaataatttccctctaa 17755790  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 19057056 - 19057110
Alignment:
Q  231 ttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||| ||||||||||||||| || | | ||||||||||| |||||||||||||||    
T  19057056 ttatttattaattttattaggtccgcagcaatttaacctaataatttccctctaa 19057110  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 837315 - 837271
Alignment:
Q  225 gtatccttatctattaattttattagatctgtaacaatttaacct 269  Q
    |||||||||| ||||||||||||||  |||| |||||||||||||    
T  837315 gtatccttatttattaattttattatgtctgcaacaatttaacct 837271  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 13461860 - 13461805
Alignment:
Q  286 cagcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  13461860 cagcaatttaacctaacaaattccctctaaaatgcaacaatccctaatatttctcc 13461805  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 38294962 - 38294910
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  38294962 caatttaacctaacaaattccctctaaaatgcagcaatccctaatatttctcc 38294910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 604439 - 604382
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctct 283  Q
    ||||||||| |||||||||| ||||||||||| ||| ||||||| ||| |||||||||    
T  604439 tatccttatttattaattttgttagatctgtagcaacttaacctaatattttccctct 604382  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 38295004 - 38294969
Alignment:
Q  286 cagcaatttaacctaacaaatttcctctaaaatgca 321  Q
    |||||||||||||||||||||||| |||||||||||    
T  38295004 cagcaatttaacctaacaaatttcatctaaaatgca 38294969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 604614 - 604557
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctct 283  Q
    ||||||| | |||||||||| ||||||||||| ||| ||||||| ||| |||||||||    
T  604614 tatccttgtttattaattttgttagatctgtagcaacttaacctaatattttccctct 604557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 13461928 - 13461879
Alignment:
Q  236 tattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    ||||||||||||||||| || ||||| |||||||  ||||||||||||||    
T  13461928 tattaattttattagatttgcaacaagttaacctactaatttccctctaa 13461879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 31249422 - 31249373
Alignment:
Q  236 tattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||||||||||||||||||| | ||| ||||| | |||||||||||||||    
T  31249422 tattaattttattagatctgcatcaacttaacataataatttccctctaa 31249373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 39616967 - 39616915
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    ||||||||||||||||||| || |||||||||    |||||||||||||||||    
T  39616967 caatttaacctaacaaattcccactaaaatgccgtgatccctaatatttctcc 39616915  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 7779559 - 7779611
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  7779559 caatttaacctaacaaattccctctaaaatgcaacaatccctaatatttctcc 7779611  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 7779439 - 7779498
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    ||||||||| ||||||||||||||| |||  ||||| ||||||| |||||||||||||||    
T  7779439 tatccttatttattaattttattaggtctacaacaacttaacctaataatttccctctaa 7779498  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 14854327 - 14854386
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    ||||||||| ||||||||||||||| | || | ||| ||||||| |||||||||||||||    
T  14854327 tatccttatttattaattttattaggtttgcagcaacttaacctaataatttccctctaa 14854386  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 3432999 - 3433048
Alignment:
Q  236 tattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    ||||||||||||||||| || ||||| ||||||| ||||||| |||||||    
T  3432999 tattaattttattagatttgcaacaacttaacctaataattttcctctaa 3433048  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 4455363 - 4455421
Alignment:
Q  227 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  4455363 atccttatttattaattttattaggtctgcaacaatttaacctaataatttccctctaa 4455421  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 16377614 - 16377562
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  16377614 caatttaacctatcaaatttcctctaaaatgcagcaatccctaatatttctcc 16377562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 4455482 - 4455534
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||| |||||||||||||| |||||||||||||  ||||||||||||||||||    
T  4455482 caatataacctaacaaattccctctaaaatgcagcaatccctaatatttctcc 4455534  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 16376474 - 16376422
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    ||||||||||||||||||| |||||||| ||||  ||||||||||||||||||    
T  16376474 caatttaacctaacaaattccctctaaagtgcagcaatccctaatatttctcc 16376422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 5553862 - 5553812
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttct 339  Q
    |||||||||||||||||||  ||||||||||||| ||||| ||||||||||    
T  5553862 caatttaacctaacaaattctctctaaaatgcaacaatccttaatatttct 5553812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 4454919 - 4454975
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctc 282  Q
    ||||||||| ||||||||||||||| |||| ||||| ||||||| ||| ||||||||    
T  4454919 tatccttatttattaattttattaggtctgcaacaacttaacctaatattttccctc 4454975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 23591524 - 23591481
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaacct 269  Q
    ||||||||| |||||||||| ||||||||| |||||||||||||    
T  23591524 tatccttatttattaattttgttagatctgcaacaatttaacct 23591481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 38694920 - 38694861
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    ||||||||| |||||| |||||||| |||| | ||| ||||||| |||||||||||||||    
T  38694920 tatccttatttattaagtttattaggtctgcagcaacttaacctaataatttccctctaa 38694861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 24788774 - 24788724
Alignment:
Q  291 atttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||||||||||| | ||||||||  |||| |||||||||||||    
T  24788774 atttaacctaacaaatttccacaaaaatgcagcaatcactaatatttctcc 24788724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 16377527 - 16377478
Alignment:
Q  236 tattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||||||||||||||||||| |  || ||||||| |||||||||||||||    
T  16377527 tattaattttattagatctgcagtaacttaacctaataatttccctctaa 16377478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 5553901 - 5553869
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgca 321  Q
    ||||||||||||||||||||| |||||||||||    
T  5553901 caatttaacctaacaaatttcatctaaaatgca 5553869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 12470 - 12418
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  12470 caatttaacctaacaaattccctctaaaatacaacaatccctaatatttctcc 12418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 17930470 - 17930418
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  17930470 caatttaacctaacaaattccctctaaaatgcagcaatccctaatatttctcc 17930418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 41075816 - 41075759
Alignment:
Q  283 taacagcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 340  Q
    ||||| |||||||||||||||||||  ||||||||||||  |||||||||||||||||    
T  41075816 taacaacaatttaacctaacaaattctctctaaaatgcagcaatccctaatatttctc 41075759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 41076381 - 41076324
Alignment:
Q  283 taacagcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 340  Q
    ||||| |||||||||||||||||||  ||||||||||||  |||||||||||||||||    
T  41076381 taacaacaatttaacctaacaaattctctctaaaatgcagcaatccctaatatttctc 41076324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 11131355 - 11131407
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||| |||||| |||||||||||||  ||||||||||||||||||    
T  11131355 caatttaacctatcaaattccctctaaaatgcagcaatccctaatatttctcc 11131407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 15255888 - 15255830
Alignment:
Q  227 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||||||| ||||||||| ||||| |||| ||||| ||||||| |||||||||||||||    
T  15255888 atccttatttattaatttaattaggtctgcaacaacttaacctaataatttccctctaa 15255830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 38857799 - 38857747
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    ||||||||||||| |||||  || |||||||||| ||||||||||||||||||    
T  38857799 caatttaacctaataaattctctttaaaatgcaacaatccctaatatttctcc 38857747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 41076530 - 41076470
Alignment:
Q  225 gtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||||||||| ||||||||||||||  |||| ||||| ||||||| |||||||| ||||||    
T  41076530 gtatccttatttattaattttattaagtctgcaacaacttaacctaataatttctctctaa 41076470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 29550128 - 29550171
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaacct 269  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||    
T  29550128 tatccttatttattaattttattaggtctgcaacaatttaacct 29550171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 38857913 - 38857854
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    ||||||||| ||||||||||||||| ||| || ||| ||||| | |||||||||||||||    
T  38857913 tatccttatttattaattttattaggtctatagcaacttaacttaataatttccctctaa 38857854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 41076089 - 41076042
Alignment:
Q  293 ttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 340  Q
    |||||||||||||||  ||||||||||||  |||||||||||||||||    
T  41076089 ttaacctaacaaattctctctaaaatgcagcaatccctaatatttctc 41076042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 3249909 - 3249867
Alignment:
Q  227 atccttatctattaattttattagatctgtaacaatttaacct 269  Q
    |||||||| |||||||||| ||||||||| |||||||||||||    
T  3249909 atccttatttattaattttgttagatctgcaacaatttaacct 3249867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 17930589 - 17930535
Alignment:
Q  227 atccttatctattaattttattagatctgtaacaatttaaccttataatttccct 281  Q
    |||||||| ||||||||||||||| |||| ||||| ||||||| |||||| ||||    
T  17930589 atccttatttattaattttattaggtctgcaacaacttaacctaataattcccct 17930535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 11131313 - 11131345
Alignment:
Q  286 cagcaatttaacctaacaaatttcctctaaaat 318  Q
    |||||||||||||||||||||||| ||||||||    
T  11131313 cagcaatttaacctaacaaatttcatctaaaat 11131345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 15256553 - 15256501
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||| |||||||||  |||||||||||||  ||| ||||||||||||||    
T  15256553 caatttaaactaacaaataccctctaaaatgcagcaattcctaatatttctcc 15256501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 17930512 - 17930476
Alignment:
Q  286 cagcaatttaacctaacaaatttcctctaaaatgcaa 322  Q
    |||||||||||||||||||||| | ||||||||||||    
T  17930512 cagcaatttaacctaacaaattccatctaaaatgcaa 17930476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 12296005 - 12296059
Alignment:
Q  287 agcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    ||||||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  12296005 agcaatttaacctaacaaattccctctaaaatgcagcaatctctaatatttctcc 12296059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 17201476 - 17201526
Alignment:
Q  290 aatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 340  Q
    |||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  17201476 aatttaacctaacaaattccctctaaaatgcagcaatccctaatatttctc 17201526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 24223515 - 24223463
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||| |||||| |||||||||||||  ||||||||||||||||||    
T  24223515 caatttaacctatcaaattccctctaaaatgcagcaatccctaatatttctcc 24223463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 24223636 - 24223576
Alignment:
Q  225 gtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||||||||| ||||||||||||||| |||| | ||| ||||||| |||||||||||||||    
T  24223636 gtatccttatttattaattttattaggtctgcagcaacttaacctaataatttccctctaa 24223576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 12295927 - 12295985
Alignment:
Q  227 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||||||| ||||||||||||||| |||| ||||| ||||||| || ||||||||||||    
T  12295927 atccttatttattaattttattaggtctgcaacaacttaacctaatgatttccctctaa 12295985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 17079993 - 17079943
Alignment:
Q  291 atttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    ||||||||||||||||| |||||||||||||  ||||| ||||||||||||    
T  17079993 atttaacctaacaaattccctctaaaatgcagcaatccttaatatttctcc 17079943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 17199982 - 17200038
Alignment:
Q  227 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctct 283  Q
    |||||||| |||||||||| |||| |||||| ||||||||||| ||| |||||||||    
T  17199982 atccttatttattaattttgttaggtctgtagcaatttaacctaatattttccctct 17200038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 24223160 - 24223108
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||| ||||||  ||||||||||||  ||||||||||||||||||    
T  24223160 caatttaacctatcaaattcactctaaaatgcagcaatccctaatatttctcc 24223108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 16799622 - 16799563
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    ||||||||| ||||||||||||||| |||| | ||| | ||||| |||||||||||||||    
T  16799622 tatccttatttattaattttattaggtctgcagcaactgaacctaataatttccctctaa 16799563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 17200571 - 17200606
Alignment:
Q  286 cagcaatttaacctaacaaatttcctctaaaatgca 321  Q
    |||||||||||||||||||||||| |||||||||||    
T  17200571 cagcaatttaacctaacaaatttcatctaaaatgca 17200606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 17203662 - 17203709
Alignment:
Q  238 ttaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    ||||||||||||| |||| ||||| ||||||| |||||||||||||||    
T  17203662 ttaattttattaggtctgcaacaacttaacctaataatttccctctaa 17203709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 6601925 - 6601875
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttct 339  Q
    |||||| |||||||||||| |||||||||||||  |||| |||||||||||    
T  6601925 caatttcacctaacaaattccctctaaaatgcagcaatctctaatatttct 6601875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 321
Target Start/End: Complemental strand, 16799544 - 16799510
Alignment:
Q  287 agcaatttaacctaacaaatttcctctaaaatgca 321  Q
    ||||||||||||||||||||||| |||||||||||    
T  16799544 agcaatttaacctaacaaatttcatctaaaatgca 16799510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 17200320 - 17200378
Alignment:
Q  227 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||||||| ||||||||||||||| |||| | ||| ||||||| ||||||||| |||||    
T  17200320 atccttatttattaattttattaggtctgcagcaacttaacctaataatttccttctaa 17200378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 24223268 - 24223211
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctct 283  Q
    ||||||||| ||||||||||||| | |||| | ||| ||||||| |||||||||||||    
T  24223268 tatccttatttattaattttatttggtctgcatcaacttaacctaataatttccctct 24223211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 19553377 - 19553427
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttct 339  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||    
T  19553377 caatttaacctaacaaattccctctaaaatgcagcaatccctaatatttct 19553427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 46883329 - 46883391
Alignment:
Q  223 ttgtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 285  Q
    |||||||||||| ||||||||||||||| |||| || || ||||||| |||||||||||||||    
T  46883329 ttgtatccttatttattaattttattaggtctgcaataacttaacctaataatttccctctaa 46883391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 9711335 - 9711385
Alignment:
Q  290 aatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||||||||||| |||||||||||| |||  |||||||||||||    
T  9711335 aatttaacctaacaaatttcatctaaaatgcaacaat-tctaatatttctcc 9711385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 29013843 - 29013796
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatt 336  Q
    ||||||||| ||||||||| |||||||||||||  |||||||||||||    
T  29013843 caatttaacttaacaaattccctctaaaatgcagcaatccctaatatt 29013796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 281
Target Start/End: Complemental strand, 47428352 - 47428297
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccct 281  Q
    ||||||||| |||||||||| ||||||||  ||||||||||||| ||| |||||||    
T  47428352 tatccttatttattaattttgttagatctacaacaatttaacctaatattttccct 47428297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 46883410 - 46883466
Alignment:
Q  286 cagcaatttaacctaacaaatttcctc--taaaatgcaaaaatccctaatatttctc 340  Q
    |||||||||||||||||||||| ||||  |||||||||  |||||||| ||||||||    
T  46883410 cagcaatttaacctaacaaattacctctttaaaatgcagcaatccctattatttctc 46883466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 11928311 - 11928363
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||||||| || |||||||||||||  ||||||||||||||||||    
T  11928311 caatttaacctaacaatttccctctaaaatgcagcaatccctaatatttctcc 11928363  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 41460966 - 41461018
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||| |||||| |||||||||||||  ||||||||||||||||||    
T  41460966 caatttaacctatcaaattccctctaaaatgcagcaatccctaatatttctcc 41461018  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 49484051 - 49484103
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||||||||||  |||||| |||||| ||||||||||||||||||    
T  49484051 caatttaacctaacaaattctctctaacatgcaacaatccctaatatttctcc 49484103  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 52740982 - 52741033
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 340  Q
    ||||||||||||||||||||| | |||||||||  |||||||||||||||||    
T  52740982 caatttaacctaacaaatttcatttaaaatgcagcaatccctaatatttctc 52741033  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 46533030 - 46533082
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||||||||||  ||||||||||| | ||||| ||||||||||||    
T  46533030 caatttaacctaacaaattatctctaaaatgctacaatccataatatttctcc 46533082  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 23482630 - 23482588
Alignment:
Q  299 taacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||||||||||||||  |||| |||||||||||||    
T  23482630 taacaaatttcctctaaaatgcagcaatctctaatatttctcc 23482588  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 6537541 - 6537500
Alignment:
Q  226 tatccttatctattaattttattagatctgtaacaatttaac 267  Q
    ||||||||| |||||||||| |||| ||||||||||||||||    
T  6537541 tatccttatttattaattttgttaggtctgtaacaatttaac 6537500  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 41462629 - 41462681
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 341  Q
    |||||||||||| |||| | ||||||||||| |  ||||||||||||||||||    
T  41462629 caatttaacctatcaaactccctctaaaatgtagcaatccctaatatttctcc 41462681  T

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Target: scaffold0368 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 326 - 279
Alignment:
Q  289 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatt 336  Q
    ||||||||||||||||||| ||| |||||||||  |||||||||||||    
T  326 caatttaacctaacaaattccctataaaatgcagcaatccctaatatt 279  T

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