View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_low_24 (Length: 351)
Name: NF0934_low_24
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 42376045 - 42375729
Alignment:
| Q |
1 |
atctctaaattttgcagatatgtaaaagggtcaattaggtggtgcataaacttgtttctatcattggaccaataagtcttactattcgatcaagagttca |
100 |
Q |
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| T |
42376045 |
atctctaaattttgcagatatgtaaaagggtcaattaggtagtgcataaacttgtttctatcattggaccaataagtcttactattcgatcaagagttca |
42375946 |
T |
|
| Q |
101 |
accaatcttactaataaatttgcttataagctgcataatttgaggaacaatttaccatatagaaacatggtttaaagattaatttagcatgaggacaaaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42375945 |
accaatcttactaataaatttgctaataagctgcataatttgaggaccaatttaccatatagaaacatggtttaaagattaatttagcatgaggacaaaa |
42375846 |
T |
|
| Q |
201 |
ttggtcaacatcattcaaaagcctctttatcttcatcaactttagggtgactgactcctaaaaatttagagggtgaatccgtaatttactctacacatag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42375845 |
ttggtcaacatcattcaaaagcctctttatcttcatcaactttagggt----gactcctaaaagattagagggtgaatccgtaatttactctacacatag |
42375750 |
T |
|
| Q |
301 |
taacaataacaccaaccaaca |
321 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
42375749 |
taacaataacaccaaacaaca |
42375729 |
T |
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