View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_low_26 (Length: 322)
Name: NF0934_low_26
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 311
Target Start/End: Complemental strand, 28954766 - 28954485
Alignment:
| Q |
30 |
taataatctttggtggaatcaaaatcaacctctccaagattgttgctctttgcaaaacttgctttactaattgaagttcggcagacatatactcaaaatt |
129 |
Q |
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| T |
28954766 |
taataatctttggtggaatcaaaatcaacctctccaagattgttgctctttgcaaaacttgctttactaattgaagttcagctgacatatattcaaaatt |
28954667 |
T |
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| Q |
130 |
tctgattactacaactttgagtttagtaaatctgtaattgcagttgtcgatgtgatgtttatgatacaattgccaatatattgcaaggtcaaattggtaa |
229 |
Q |
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| T |
28954666 |
tctgattactacaactttgagttgagtaaatctgtgattgcagttgtcaatgtgatgtttatgatacaattgccaatatattgcaaggtcaaattggtaa |
28954567 |
T |
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| Q |
230 |
tcatttaactgcacatataatttaaagtcaggcacaagacaacataaataaatcatagatatattttcaaatttagattcat |
311 |
Q |
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| T |
28954566 |
tcatttaactgcacatataatttaaagtcaggcacaagacaacataaataaatcatagatatatttttaaatttagattcat |
28954485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 32406443 - 32406212
Alignment:
| Q |
31 |
aataatctttggtggaatcaaaatcaacctctccaagattgttgctctttgcaaaacttgctttactaattgaagttcggcagacatatactcaaaattt |
130 |
Q |
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| T |
32406443 |
aataatctttggtggaattagcaccagcctctccaaaattaccgcttttagcaaaactatctttactaattcaagctcagaaggcagatacttaaaacct |
32406344 |
T |
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| Q |
131 |
ctgattactacaactttgagtttagtaaatctgtaattgcagttgtcgatgtgatgtttatgatacaattgccaatatattgcaaggtcaaattggtaat |
230 |
Q |
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| T |
32406343 |
gtcagcactacaactttgagttgagtaaatttgtgattgcaattgtcaatgtgaggtttctggtgcatttgccaatgtgttccaaggtcaaactggtgat |
32406244 |
T |
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| Q |
231 |
catttaactgcacatataatttaaagtcaggc |
262 |
Q |
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| T |
32406243 |
catttagctgcacatgtagtttaaagttaggc |
32406212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 259
Target Start/End: Original strand, 16901746 - 16901945
Alignment:
| Q |
60 |
tctccaagattgttgctctttgcaaaacttgctttactaattgaagttcggcagacatatactcaaaatttctgattactacaactttgagtttagtaaa |
159 |
Q |
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||||||| ||||||||||||||||||| | ||||| || | |||||| | || | | ||| |||| |||| || ||| |||||||||||| |||||| |
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| T |
16901746 |
tctccaatattgttgctctttgcaaaattatctttagtagctcaagttcagaaggtaaaaacttaaaacttctcatcactgcaactttgagttgagtaaa |
16901845 |
T |
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| Q |
160 |
tctgtaattgcagttgtcgatgtgatgtttatgatacaattgccaatatattgcaaggtcaaattggtaatcatttaactgcacatataatttaaagtca |
259 |
Q |
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| T |
16901846 |
tttgtgattgcatttgtcaagttgaagtttatggtgcaattcccaataaattccaaggtcaaatttgtaattttttagctgcaaatataggttaaagtca |
16901945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 257
Target Start/End: Complemental strand, 28840843 - 28840640
Alignment:
| Q |
54 |
tcaacctctccaagattgttgctctttgcaaaacttgctttactaattgaagttcggcagacatatactcaaaatttctgattactacaactttgagttt |
153 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||| || | |||||| | || | | ||| |||| | || || || | ||||||||| | |
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| T |
28840843 |
tcaacctctccaaaattgttgctctttgcaaaactatctttaccaactcaagttctgaaggaagaaacttaaaactccttatcaccagaactttgagctg |
28840744 |
T |
|
| Q |
154 |
agtaaatctgtaattgcagttgtcgatgtgatgtttatgatacaattgccaatatattgcaaggtcaaattggtaatcatttaactgcacatataattta |
253 |
Q |
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||||||| ||| ||| ||||||| | || | | || | ||||| |||||| ||| ||||||||||| ||||||||||| ||||| ||||| |||| |
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| T |
28840743 |
agtaaatttgtgattacagttgttaagtagaggctgctggttcaatttccaatacattccaaggtcaaatatgtaatcatttagctgcatatatagttta |
28840644 |
T |
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| Q |
254 |
aagt |
257 |
Q |
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|||| |
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| T |
28840643 |
aagt |
28840640 |
T |
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