View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_low_29 (Length: 306)
Name: NF0934_low_29
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_low_29 |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 29 - 297
Target Start/End: Complemental strand, 50805310 - 50805042
Alignment:
| Q |
29 |
aagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805310 |
aagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaa |
50805211 |
T |
|
| Q |
129 |
gcatgctatgttgatatgaggctaacaaagatgtttttgagagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaac |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805210 |
gcatgctatgttgatatgaggctaacaaagatgtttttgagagtctgagaaaaaaaccaaaagtagaatacgacgggcaacggttctcttacaaggtaac |
50805111 |
T |
|
| Q |
229 |
ctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatct |
297 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805110 |
ctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatct |
50805042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 29 - 297
Target Start/End: Original strand, 50870567 - 50870835
Alignment:
| Q |
29 |
aagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870567 |
aagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaa |
50870666 |
T |
|
| Q |
129 |
gcatgctatgttgatatgaggctaacaaagatgtttttgagagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaac |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870667 |
gcatgctatgttgatatgaggctaacaaagatgtttttgagagtctgagaaaaaaaccaaaagtagaatacgacgggcaacggttctcttacaaggtaac |
50870766 |
T |
|
| Q |
229 |
ctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatct |
297 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870767 |
ctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatct |
50870835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 29 - 297
Target Start/End: Original strand, 19056877 - 19057146
Alignment:
| Q |
29 |
aagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19056877 |
aagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaa |
19056976 |
T |
|
| Q |
129 |
gcatgctatgttgatatgaggctaacaaagatgtttttgagagtctgag-nnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaa |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19056977 |
gcatgctatgttgatatgaggctaacaaagatgtttttgagagtctgagaaaaaaaaccaaaagtagaatacgacgggcaacggttctcttacaaggtat |
19057076 |
T |
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| Q |
228 |
cctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatct |
297 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057077 |
cctttacgggttcatatatcttaaacagttttatatttgaatactcctttagcaaataacttcttcatct |
19057146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 29 - 295
Target Start/End: Original strand, 40705496 - 40705762
Alignment:
| Q |
29 |
aagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaa |
128 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40705496 |
aagtccacaattaggaattgatccatcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttacaccagagcaaataaatgaa |
40705595 |
T |
|
| Q |
129 |
gcatgctatgttgatatga-ggctaacaaagatgtttttgagagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaa |
227 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40705596 |
gcatgctatgttgatatgagggctaacaaagatgtttttgagagtctaaggaaaaatccaaaagtagaatacgacgggcaacggttctcttacaaggtaa |
40705695 |
T |
|
| Q |
228 |
cctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcat |
295 |
Q |
| |
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| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
40705696 |
cttttacgggttcatatatctt-aacagttttatatttaaatactcctttagcaaataacttattcat |
40705762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 29 - 297
Target Start/End: Complemental strand, 11463 - 11195
Alignment:
| Q |
29 |
aagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || | | |||||||||||| |
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| T |
11463 |
aagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttgatttgctgatagacacgacaagcttttacacaaaaccaaataaatgaa |
11364 |
T |
|
| Q |
129 |
gcatgctatgttgatatga-ggctaacaaagatgtttttgagagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaa |
227 |
Q |
| |
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||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||| || ||| || |||||||||||||| |
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| T |
11363 |
gcatgctatgttgatctgagggctaacaaagatgtttttgagagtctgaggaaaaacccaaaagtagagtacgacaggaaacagtactcttacaaggtaa |
11264 |
T |
|
| Q |
228 |
cctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatct |
297 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11263 |
cctttacgggttcatatatctt-aacaattttatatttaaatactcctttagcaaataacttcttcatct |
11195 |
T |
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