View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_low_32 (Length: 296)
Name: NF0934_low_32
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_low_32 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 9857098 - 9856832
Alignment:
| Q |
30 |
caatggtattcttcttcatccatggatgaatttgaaaagaaaaaatatcgagtgtggaagaaattggaattttacttgcgagtagaaaagagagtttttg |
129 |
Q |
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| T |
9857098 |
caatggtattcttcttcatccatggatgaaattgaaaagaaaaaataacgagggttgaataaattggaattttacttgcgagtagaaaagagagtttttg |
9856999 |
T |
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| Q |
130 |
ttcctggtacaaaaatacaaaggagagggtttgggaacaaatatcgagaggtagggttagtcgtatttaaaaagaagagaaattgatcgatgtgtggata |
229 |
Q |
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| T |
9856998 |
ttcctggtacaaaaatacaaaggagagggtttgggaacaaatatcgagaggtagggttagtcgtatttaaaaagaagagaaattgatcgatgtgtggata |
9856899 |
T |
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| Q |
230 |
aacggagcaagacttggcaataaagagaagagggatagatagggttagtcgtatataaatagagcaa |
296 |
Q |
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| T |
9856898 |
aacggagcaagacttggcaataaagagaagagggatagatagggttagtcgtatataaatagagcaa |
9856832 |
T |
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