View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_low_33 (Length: 288)
Name: NF0934_low_33
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_low_33 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 32 - 288
Target Start/End: Complemental strand, 19057379 - 19057123
Alignment:
| Q |
32 |
gagcagagactacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatct |
131 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057379 |
gagcagagaatacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatct |
19057280 |
T |
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| Q |
132 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057279 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
19057180 |
T |
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| Q |
232 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaag |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057179 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaag |
19057123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 32 - 288
Target Start/End: Original strand, 50804809 - 50805065
Alignment:
| Q |
32 |
gagcagagactacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatct |
131 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50804809 |
gagcagagactacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatct |
50804908 |
T |
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| Q |
132 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804909 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
50805008 |
T |
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| Q |
232 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaag |
288 |
Q |
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| T |
50805009 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaag |
50805065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 32 - 288
Target Start/End: Complemental strand, 50871068 - 50870812
Alignment:
| Q |
32 |
gagcagagactacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatct |
131 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50871068 |
gagcagagactacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatct |
50870969 |
T |
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| Q |
132 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
231 |
Q |
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| T |
50870968 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
50870869 |
T |
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| Q |
232 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaag |
288 |
Q |
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| T |
50870868 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaag |
50870812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 42349049 - 42348931
Alignment:
| Q |
101 |
gaagagtacataccactttcgacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
191 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
42349049 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
42348950 |
T |
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| Q |
192 |
cgtaggtagaaccatcttg |
210 |
Q |
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||||||||||||||||||| |
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| T |
42348949 |
cgtaggtagaaccatcttg |
42348931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 11181 - 11218
Alignment:
| Q |
251 |
aaaaaacaaacaacagatgaagaagttatttgctaaag |
288 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
11181 |
aaaaaaaaaacaacagatgaagaagttatttgctaaag |
11218 |
T |
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