View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0934_low_44 (Length: 265)

Name: NF0934_low_44
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0934_low_44
NF0934_low_44
[»] chr8 (12 HSPs)
chr8 (25-228)||(37706376-37706579)
chr8 (25-228)||(24451953-24452156)
chr8 (25-222)||(35369662-35369861)
chr8 (25-220)||(21135797-21135993)
chr8 (25-228)||(35863510-35863714)
chr8 (25-228)||(16473452-16473655)
chr8 (25-228)||(16478023-16478226)
chr8 (113-228)||(36063139-36063255)
chr8 (133-228)||(39337454-39337549)
chr8 (25-109)||(13323428-13323512)
chr8 (128-228)||(41280545-41280644)
chr8 (32-65)||(23931998-23932031)
[»] chr7 (11 HSPs)
chr7 (25-228)||(15131173-15131376)
chr7 (25-228)||(46331218-46331422)
chr7 (25-228)||(44167379-44167582)
chr7 (25-228)||(46043911-46044115)
chr7 (25-228)||(33625255-33625459)
chr7 (25-227)||(6934575-6934778)
chr7 (25-228)||(45958349-45958550)
chr7 (25-173)||(28094939-28095088)
chr7 (138-228)||(43083583-43083673)
chr7 (133-228)||(3496119-3496214)
chr7 (133-228)||(38199518-38199613)
[»] chr3 (12 HSPs)
chr3 (25-228)||(45234962-45235166)
chr3 (25-228)||(32943461-32943665)
chr3 (25-228)||(53439764-53439970)
chr3 (25-228)||(37179414-37179617)
chr3 (25-228)||(32147451-32147653)
chr3 (25-171)||(1429809-1429956)
chr3 (25-229)||(53397551-53397751)
chr3 (133-228)||(117174-117269)
chr3 (147-228)||(50614823-50614904)
chr3 (173-228)||(44557346-44557401)
chr3 (25-83)||(27868310-27868368)
chr3 (148-182)||(38634545-38634579)
[»] chr2 (9 HSPs)
chr2 (25-228)||(18672662-18672865)
chr2 (25-228)||(43932384-43932588)
chr2 (25-228)||(44493351-44493555)
chr2 (25-228)||(42487293-42487496)
chr2 (25-197)||(20720430-20720603)
chr2 (129-228)||(3105568-3105667)
chr2 (25-132)||(23787610-23787718)
chr2 (133-228)||(21439560-21439655)
chr2 (133-213)||(20719135-20719214)
[»] chr1 (11 HSPs)
chr1 (25-228)||(46596394-46596598)
chr1 (25-228)||(30982001-30982205)
chr1 (25-228)||(33708560-33708764)
chr1 (25-228)||(36362719-36362926)
chr1 (69-228)||(12000190-12000350)
chr1 (133-228)||(37986473-37986568)
chr1 (133-228)||(36248799-36248894)
chr1 (149-227)||(40182115-40182193)
chr1 (143-228)||(12367977-12368062)
chr1 (133-229)||(15054127-15054223)
chr1 (133-228)||(29231578-29231673)
[»] chr4 (10 HSPs)
chr4 (25-228)||(10322167-10322371)
chr4 (25-228)||(33688916-33689120)
chr4 (25-227)||(510637-510840)
chr4 (25-227)||(18087097-18087300)
chr4 (25-226)||(31317014-31317216)
chr4 (25-228)||(44209118-44209323)
chr4 (35-227)||(25422535-25422728)
chr4 (25-228)||(35060553-35060758)
chr4 (133-228)||(11670571-11670665)
chr4 (133-228)||(53571273-53571368)
[»] chr5 (6 HSPs)
chr5 (36-228)||(41139497-41139690)
chr5 (25-228)||(13920501-13920705)
chr5 (25-229)||(43440497-43440701)
chr5 (29-228)||(38693093-38693293)
chr5 (25-228)||(8217630-8217834)
chr5 (133-228)||(26865435-26865530)
[»] scaffold0651 (1 HSPs)
scaffold0651 (25-226)||(6482-6684)
[»] chr6 (2 HSPs)
chr6 (25-228)||(5079123-5079327)
chr6 (133-228)||(17246052-17246147)
[»] scaffold0097 (2 HSPs)
scaffold0097 (25-197)||(24268-24441)
scaffold0097 (133-213)||(22972-23052)
[»] scaffold0003 (1 HSPs)
scaffold0003 (133-228)||(239741-239836)
[»] scaffold0148 (2 HSPs)
scaffold0148 (25-131)||(38446-38553)
scaffold0148 (127-228)||(35711-35812)
[»] scaffold0002 (1 HSPs)
scaffold0002 (25-130)||(172314-172420)
[»] scaffold0385 (1 HSPs)
scaffold0385 (146-228)||(9701-9783)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 37706376 - 37706579
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctacccttttttctttgc 124  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37706376 ataattctaggaattggttctgtaagtgatattgggctcaacgaggccgttttacaaataatatatcatggatttattggcgctacccttttttcttggc 37706475  T
Q  125 aggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcg 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37706476 aggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatattcacgattttcactatcttatcg 37706575  T
Q  225 atga 228  Q
    ||||    
T  37706576 atga 37706579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 24452156 - 24451953
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctacccttttttctttgc 124  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |     
T  24452156 ataattctaggaattggttctgtaagtgatattgggctcaacgggaccgttttacaaataatatctcatggatttattggcgctacccttttttcttagt 24452057  T
Q  125 aggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcg 224  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  24452056 aggaactagttatgataaactacgtcttctttatcttgacgaaatgggtggaatggctatcccaatgccaaaaatattcacgattttcactatcttatcg 24451957  T
Q  225 atga 228  Q
    ||||    
T  24451956 atga 24451953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 35369861 - 35369662
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctacccttttttctttgc 124  Q
    |||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||| ||    
T  35369861 ataattataggaattggttatataagtgatattgggctcaacgaggccgttttacaaataatatatcatagatttattggcactgcccttttttcttggc 35369762  T
Q  125 aggaact--agttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttat 222  Q
    |||||||  ||||| |||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  35369761 aggaactagagttatgatagactacttcttctttatcttgacgaaatgggcggaatggctatcccaatgccaaaaatattcacgattttcactatcttat 35369662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 21135993 - 21135797
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    |||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |||| ||||||||||| |||||||||||| |||||    
T  21135993 ataattataggaattggttctataagtgatattgggctcaacggggccgttttacaaataacatttcatagatttattggctctaccctttttttctttg 21135894  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatctt 220  Q
    || ||| |||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  21135893 caagaattagttatgataaactacgtcttctttatcttgacgaaatgggcgaaatggctatcccaatgccaaaaatattcacgattttcactatctt 21135797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 35863714 - 35863510
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    |||||||||||| ||| || | || || ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |    
T  35863714 ataattctaggagttgattatgtatgttatatttggctcaacgggaccgttttacaaataatatctcatggatttattggcgctaccctttttttcttgg 35863615  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| |||||||||||  |||||||||||||||| || ||||||||||||||||| ||| |||||||| |||| |||||||||||||||||    
T  35863614 caggaactagttatgataaactacgcattctttatcttgacgaaataggcggaatggctatcccgatgccaaaaatattcacaattttcactatcttatc 35863515  T
Q  224 gatga 228  Q
    |||||    
T  35863514 gatga 35863510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 16473655 - 16473452
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||||| ||||| |||| |||||||| ||| |    
T  16473655 ataattctaggaattggttctataagtgatattggactcaacggggccgttttacaaataatatctcatggatt-attggtgctatcctttttttcttag 16473557  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    |||||||||||||  ||||||||||||||||||||||| || | |||||| |||| |  |||||||||  ||||||| ||||||||||||||||||||||    
T  16473556 caggaactagttataataaactacgtcttctttatcttaacaaaatgggcagaattgtcatcccaatgctaaaaatattcacgattttcactatcttatc 16473457  T
Q  224 gatga 228  Q
    |||||    
T  16473456 gatga 16473452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 16478226 - 16478023
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||||| ||||| |||| |||||||| ||| |    
T  16478226 ataattctaggaattggttctataagtgatattggactcaacggggccgttttacaaataatatctcatggatt-attggtgctatcctttttttcttag 16478128  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    |||||||||||||  ||||||||||||||||||||||| || | |||||| |||| |  |||||||||  ||||||| ||||||||||||||||||||||    
T  16478127 caggaactagttataataaactacgtcttctttatcttaacaaaatgggcagaattgtcatcccaatgctaaaaatattcacgattttcactatcttatc 16478028  T
Q  224 gatga 228  Q
    |||||    
T  16478027 gatga 16478023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 36063139 - 36063255
Alignment:
Q  113 ttttttctttgcaggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtc-aaaaatactcacgatttt 211  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | ||||||  ||||||||||    
T  36063139 ttttttttttgcaggaactagttatgataaactacgtcttctttatcttgacgaaatgggcggaatgactatcccaatgccaaaaaatgttcacgatttt 36063238  T
Q  212 cactatcttatcgatga 228  Q
    ||| |||||||||||||    
T  36063239 caccatcttatcgatga 36063255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 39337549 - 39337454
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| ||||||| |||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||    
T  39337549 gttatgatagactacgttttctttatcttgacgaaatgggcggaatgactatcccaatgccaaaaatattcacgattttcactatcttatcgatga 39337454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 13323428 - 13323512
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgcta 109  Q
    |||||||||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||| ||||||||| ||||||||||    
T  13323428 ataattctagaaattggttctataagtgatattgggctcaacggggccgttgtacaaataatatctcatggattgattggcgcta 13323512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 41280545 - 41280644
Alignment:
Q  128 aactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatg 227  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||||||||||  |||  | ||  |||||||| ||| ||||||||||||||||||||||    
T  41280545 aactagttatgataaattacgtcttctttatcttgacgaaatgggcggaatgattattac-ataccaaaaatattcaagattttcactatcttatcgatg 41280643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 23931998 - 23932031
Alignment:
Q  32 taggaattggttctataagtgatattgggctcaa 65  Q
    ||||||||||||||||||||||||||||||||||    
T  23931998 taggaattggttctataagtgatattgggctcaa 23932031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 15131376 - 15131173
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctacccttttttctttgc 124  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||    
T  15131376 ataattccaggaattggttctataagtgatattgagctcaacgagaccgttttacaaataatatctcatggatttattggtgctacccttttttcttggc 15131277  T
Q  125 aggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcg 224  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  15131276 aggaactagttatgataaactacgtcttctttatcttgacaaaatgggcggaatggctatcccaatgccaaaattattcacgattttcactatcttatcg 15131177  T
Q  225 atga 228  Q
    ||||    
T  15131176 atga 15131173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 46331422 - 46331218
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctt-ttttctttg 123  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||  |    
T  46331422 ataattataggaattggttctataagtgatattgggctcaacgaggccgttttacaaataatatctcatggatttattggcgctaccctttttttctcgg 46331323  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| |||||| || ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||    
T  46331322 caggaactagttatgataaaataagtcttctttatcttgacgaaatgggcggaatgactatcccaatgtcaaaaatattcatgattttcactatcttatc 46331223  T
Q  224 gatga 228  Q
    |||||    
T  46331222 gatga 46331218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 44167379 - 44167582
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctacccttttttctttgc 124  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| || ||||||||||||||||| ||||||||||| ||    
T  44167379 ataattctaggaattggttctataagtgatattggactcaacggggccgttttacaaataatatttcgtggatttattggcgctagccttttttcttggc 44167478  T
Q  125 aggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcg 224  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  44167479 aggaactagttatgataaactacgtcttctttatcttaacgaaatgggtggaatggctatcccaatgccaaaaatattcacgattttcattatcttatcg 44167578  T
Q  225 atga 228  Q
    ||||    
T  44167579 atga 44167582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 46043911 - 46044115
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    |||||| |||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |    
T  46043911 ataattttaggaattagttctataagtgatattgggctcaacggggccgttttacaaataatatctcatgaatttattggcgctaccctttttttcttgg 46044010  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  46044011 caggaactagttatgataaactacgtcttctttatcttgacgaaaggggcggaatgactatcccaatgccaaaaatattcacgattttcactatcttatc 46044110  T
Q  224 gatga 228  Q
    |||||    
T  46044111 gatga 46044115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 33625459 - 33625255
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctt-ttttctttg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||| |||||||||| ||||||| |    
T  33625459 ataattctaggaattggttctataagtgatattgggctcaacgcggccgttttacaaataatatctcatggatttattgacgctaccctttttttcttgg 33625360  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||| ||| ||||| |||||| |||||||||||||||||||||| |||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||    
T  33625359 cagaaaccagttatgataaattacgtcttctttatcttgacgaaatgggcggaatggctatctcaatgcaaaaaatattcacgattttcactatcttatc 33625260  T
Q  224 gatga 228  Q
    |||||    
T  33625259 gatga 33625255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 6934575 - 6934778
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||||| ||| ||||||||| ||| |    
T  6934575 ataattctaggaattggttctataagtgatactgggctcaacggggccattttacaaataatatctcatggatttattggggctgccctttttttcttgg 6934674  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  6934675 caggaactagttatgatagactacatcttctttatcttgacgaaatgggcggaatggctatcccaatgctaaaaatattcacgattttcactatcttatc 6934774  T
Q  224 gatg 227  Q
    ||||    
T  6934775 gatg 6934778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 45958349 - 45958550
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctacccttttttctttgc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||| | |||||||||||||||| ||    
T  45958349 ataattctaggaattggttctataagtgatattgggctcaacgaggccgttttacaaataatatctcacggatttattagtgctacccttttttcttggc 45958448  T
Q  125 aggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcg 224  Q
    || ||||||||| ||||||  | ||||||||||||||||||| |||||||||||| |||||| ||||||||||||| | || ||||||||||||||||||    
T  45958449 agaaactagttatgataaa--atgtcttctttatcttgacgaaatgggcggaatgactatcctaatgtcaaaaatattaacaattttcactatcttatcg 45958546  T
Q  225 atga 228  Q
    ||||    
T  45958547 atga 45958550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 28095088 - 28094939
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctac-ccttttttctttg 123  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| ||||||||||||||| ||| | | ||||||||| |    
T  28095088 ataattctaggaattggttctataagtgatactgggctcaacgaggccattttacaaataatatctcatggatttattggggctgcactttttttcttgg 28094989  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggc 173  Q
    ||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  28094988 caggaactagttatgatagactacgtcttctttatcttgacgaaatgggc 28094939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 43083583 - 43083673
Alignment:
Q  138 gataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| ||||||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43083583 gatagactatgtcttctttatcttgacgaaatggatggaatggctatcccaatgtcaaaaatattcacgattttcactatcttatcgatga 43083673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 3496214 - 3496119
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||| |||||||||||| ||||||||||    
T  3496214 gttatgatagactacgtcttctttatcttgacgaaatgggcggaatgactatcccaatgccaaaaatattcatgattttcactattttatcgatga 3496119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 38199613 - 38199518
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| |||||||||||||||||||||||| |||  ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||    
T  38199613 gttatgatagactacgtcttctttatcttgacgaaatgaacggaatgactatcccaatgccaaaaatattcacgattttcactatcttatcgatga 38199518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 45234962 - 45235166
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |    
T  45234962 ataattctaggaattggttctataagtgatattgggctcaacgaggccgttttacaaataatatctcatggacttattggcgctaccctttttttcttgg 45235061  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    || |||||||||| ||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  45235062 catgaactagttatgataaactacgtcttctttatcttgacgaaatggagggaatggctatcccaatgccaaaaatattcacgattttcactatcttatc 45235161  T
Q  224 gatga 228  Q
    |||||    
T  45235162 gatga 45235166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 32943665 - 32943461
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||| ||||||||||||| || |||||||||||| ||| |    
T  32943665 ataattctaggaattggttctataagtgatattgggctcaacggtgccattttacaaataatatctcatggatttatttgcactaccctttttttcttcg 32943566  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| |||||||||||||||||||||||||| || || |||||||||| ||||| |||| |||||||| ||||||||||||||||||||||    
T  32943565 caggaactagttatgataaactacgtcttctttatcttgaagaaataggcggaatggttatcctaatgccaaaaatattcacgattttcactatcttatc 32943466  T
Q  224 gatga 228  Q
    |||||    
T  32943465 gatga 32943461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 53439970 - 53439764
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccc---ttttttctt 121  Q
    ||||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||| ||||||||||||||| |||||||   |||||||||    
T  53439970 ataattctaggaattggttctataaatgatattgggctcagcggggccgttttacaaataatatctcatggatttattggagctaccccttttttttctt 53439871  T
Q  122 tgcaggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatctta 221  Q
     | |||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| ||||||| |||||||    
T  53439870 ggtaggaactagttatgataaactacgtcttctttatcttgacgaaatgggcgcaatggctatcccaatgtcaaaaatattcacaattttcattatctta 53439771  T
Q  222 tcgatga 228  Q
    | |||||    
T  53439770 ttgatga 53439764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 37179617 - 37179414
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctac-ccttttttctttg 123  Q
    |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| ||||||||||||||||||||| | ||||||||| |    
T  37179617 ataattctaggaattggttctataagtgatattgggttcaacgaggctgttttacaaataatatctcatggatttattggcgctacactttttttcttgg 37179518  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| |||||| || || |||||||||||  ||| ||||||||||| |||||| ||||| |||||||| ||||||||||||||||||||||    
T  37179517 caggaactagttatgataaattaagttttctttatcttaccgaaatgggcggaat-gctatcacaatgccaaaaatattcacgattttcactatcttatc 37179419  T
Q  224 gatga 228  Q
    |||||    
T  37179418 gatga 37179414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 32147653 - 32147451
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctt-ttttctttg 123  Q
    |||||||||||| |||||||||||||||||||||||||||||| | || ||| ||||||||||| ||||||||||||||  ||||||||| ||||||| |    
T  32147653 ataattctaggagttggttctataagtgatattgggctcaacggggccatttgacaaataatatctcatggatttattgatgctaccctttttttcttcg 32147554  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    || | |||||||| |||||||||||||||||||||| |||| | ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  32147553 caagtactagttatgataaactacgtcttctttatcctgacaaaatgggcggaatggc--tcccaatgtcaaaaatattcacgattttcactatcttatc 32147456  T
Q  224 gatga 228  Q
    |||||    
T  32147455 gatga 32147451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 1429956 - 1429809
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctt-ttttctttg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |    
T  1429956 ataattctaggaattggttctataagtgatattgggctcaacgggactgttttacaaataatatctcatggatttattggcgctaccctttttttcttgg 1429857  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgg 171  Q
    ||||||||||||| |||||||||||| |||||||||||||||| ||||    
T  1429856 caggaactagttatgataaactacgttttctttatcttgacgaaatgg 1429809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 53397751 - 53397551
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt--cttt 122  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||||||| ||      |||||||| ||||||||||||  |||     
T  53397751 ataattctaggaattggttttataaatgatattgggctcaacggggccgttttacaaataatatctc------ttattggcactacccttttttttcttg 53397658  T
Q  123 gcaggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttat 222  Q
    | |||||||| ||| ||||||||||||||||||||||||||||| ||||||| |||| |||| |||||| |||||||| |||| ||||||| ||||||||    
T  53397657 gtaggaactaattatgataaactacgtcttctttatcttgacgaaatgggcgcaatgactattccaatgccaaaaatattcacaattttcattatcttat 53397558  T
Q  223 cgatgat 229  Q
     ||||||    
T  53397557 tgatgat 53397551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 117174 - 117269
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| |||||||||||||||||||||||| ||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||    
T  117174 gttatgatagactacgtcttctttatcttgacgaaatgggcggaatggatatctcaatgccaaaaatattcacgattttcactatcttatcgatga 117269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 50614823 - 50614904
Alignment:
Q  147 cgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||||||||||||||||||| ||||| |||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||    
T  50614823 cgtcttctttatcttgacgaaatgggtggaatgactatcccaatgccaaaaatattcacgattttcactatcttatcaatga 50614904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 44557346 - 44557401
Alignment:
Q  173 cggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  44557346 cggaatggctatcccaatgccaaaaatattcacgattttcactatcttatcgatga 44557401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 27868310 - 27868368
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaat 83  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  27868310 ataattctaggaattggttctataagtgatattggtcgcaacgaggccgttttacaaat 27868368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 38634579 - 38634545
Alignment:
Q  148 gtcttctttatcttgacgacatgggcggaatggct 182  Q
    ||||||||||||||||||| |||||||||||||||    
T  38634579 gtcttctttatcttgacgaaatgggcggaatggct 38634545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 18672865 - 18672662
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctacccttttttctttgc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||| ||||||||||||||||| ||    
T  18672865 ataattctaggaattggttctataagtgatattgggctcaacggggccgttttacaaataacatctcatggatttattgacgctacccttttttcttggc 18672766  T
Q  125 aggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcg 224  Q
    | |||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  18672765 aagaactagttatgataaactacgtcttatttatcttgacgaaatgggcgaaatggctatcccaatgccaaaaatattcacgattttcactatcttatcg 18672666  T
Q  225 atga 228  Q
    ||||    
T  18672665 atga 18672662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 43932384 - 43932588
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||| ||||||||||||| ||| |    
T  43932384 ataattctaggaattggttctataagtgatattgggctcaacggggccgttttacaaataatatctcatgaatttattggtgctaccctttttttcttgg 43932483  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    || || ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  43932484 caagacctagttatgataaactacgtcttctttatcttaacgaaatgggcggaatggctatcccaatgtaaaaaatattcatgattttcactatcttatc 43932583  T
Q  224 gatga 228  Q
    |||||    
T  43932584 gatga 43932588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 44493555 - 44493351
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    |||||||||||||| |||||||||||||||||||| |||||||   |||||||||||||||||| |||||||||||||||| |||||||||||| ||| |    
T  44493555 ataattctaggaatcggttctataagtgatattggcctcaacggagccgttttacaaataatatctcatggatttattggcactaccctttttttcttgg 44493456  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| |||||||||||||||||||||||||| || |||||||||||| | ||||||||| |||||||| ||||||||||||||||||||||    
T  44493455 caggaactagttatgataaactacgtcttctttatcttgatgaaatgggcggaatgacaatcccaatgccaaaaatattcacgattttcactatcttatc 44493356  T
Q  224 gatga 228  Q
    |||||    
T  44493355 gatga 44493351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 42487293 - 42487496
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccc-ttttttctttg 123  Q
    |||||| ||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| ||||||||||||||||||||||| ||||||||| |    
T  42487293 ataattgtaggaattggttctataagtgatattgagctcaacggggccgttttacaaataatatctcatggatttattggcgctaccctttttttcttgg 42487392  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||  ||||||||| |||||||| ||||||||||||| ||||||||    
T  42487393 caggaactagttatgataaactacgtcttctttatcttgacgaaatggacggaatggacatcccaatg-caaaaatattcacgattttcaccatcttatc 42487491  T
Q  224 gatga 228  Q
     ||||    
T  42487492 aatga 42487496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 20720603 - 20720430
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctt-ttttctttg 123  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| |||||||||| ||||||||| ||||||| |    
T  20720603 ataattctaggaattggttctataagtgataatgggctcaacgaggccgttttacaaataatatctcatagatttattggtgctaccctttttttcttgg 20720504  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaa 197  Q
     |||||||| ||| |||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||    
T  20720503 gaggaactaattatgataaactacatcttctttatcttgacgaaatgggcggaatgactatcccaatgccaaaa 20720430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 3105667 - 3105568
Alignment:
Q  129 actagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||||||| ||||||||||| ||||||||| |||| || |||||||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||    
T  3105667 actagttatgataaactacgccttctttattttgaagaaatgggcggaatgactatcccaatgccaaaaatattcaagattttcactatcttatcgatga 3105568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 23787718 - 23787610
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgaga-ccgttttacaaataatatatcatggatttattggcgctacc-cttttttcttt 122  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| |||||  |||||||||     
T  23787718 ataattctaggaattggttctagtagtgatattgggctcaac-agagccgttttacaaataatatttcatggatttattggcactaccttttttttcttg 23787620  T
Q  123 gcaggaacta 132  Q
    ||||||||||    
T  23787619 gcaggaacta 23787610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 21439560 - 21439655
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| |||||||||||||||||||||||| || ||||||||| ||||| ||||| ||| |||| |||||||||||| ||||||||||||||    
T  21439560 gttatgatagactacgtcttctttatcttgacgaaataggcggaatgactatctcaatgccaataatattcacgattttcattatcttatcgatga 21439655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 20719135 - 20719214
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttca 213  Q
    |||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  20719135 gttatgatagactacgtctt-tttatcttgacgaaatgggcggaatggctatcccaatgccaaaaataatcacgattttca 20719214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 46596394 - 46596598
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| ||| |    
T  46596394 ataattataggaattggttttataagtgaaattgggctcaacgaggccgttttacaaataatatatcatggatttattggtgctgccctttttttcttgg 46596493  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  46596494 caggaactagttatgataaactacgtcttctttatcttgacgaaatgagcggaatggctatcccaatgccaaaaatattcacgattttcactatcttatc 46596593  T
Q  224 gatga 228  Q
    |||||    
T  46596594 gatga 46596598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 30982001 - 30982205
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |    
T  30982001 ataattttaggaattgattctaaaagtgatattgggctcaacgagaccgttttacaaataatatctcatggatttattggtgctaccctttttttcttgg 30982100  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| |||||| | |||| |||||||||||||||||    
T  30982101 caggaactagttatgataaactacgtcttctttatcttgacgaaatgggcggagtggttatcccaatgccaaaaaaattcacaattttcactatcttatc 30982200  T
Q  224 gatga 228  Q
    |||||    
T  30982201 gatga 30982205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 33708560 - 33708764
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||| |||||||||||||| | |||||||||||| ||| |    
T  33708560 ataattctaggaattggttctataagtgatattgggctcaacggggccattttataaataatatctcatggatttattgacactaccctttttttcttgg 33708659  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    || ||| |||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||  ||||||| ||||||||||||||||||||||    
T  33708660 catgaattagttatgataaactacgtcttctttatcttgacgaaatggacggaatgactatcctaatgctaaaaatattcacgattttcactatcttatc 33708759  T
Q  224 gatga 228  Q
    |||||    
T  33708760 gatga 33708764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 36362719 - 36362926
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctacccttttttcttt-- 122  Q
    |||||| || ||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| ||| |||||||| |||      
T  36362719 ataattttatgaattggttctataagtgatattgggctcaacggggccgttttacaaataatatctcatggatttattggcactatccttttttttttct 36362818  T
Q  123 --gcaggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatctt 220  Q
      | |||||||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||||||||| |||||||| |||| ||||||| ||||||    
T  36362819 tggtaggaactagttatgataaactacgtcttctttatcttgacgaaatgggcgcattggctatcccaatgccaaaaatattcacaattttcattatctt 36362918  T
Q  221 atcgatga 228  Q
    ||||||||    
T  36362919 atcgatga 36362926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 69 - 228
Target Start/End: Complemental strand, 12000350 - 12000190
Alignment:
Q  69 gaccgttttacaaataatatatcatggatttattggcgctacccttt-tttctttgcaggaactagttacgataaactacgtcttctttatcttgacgac 167  Q
    |||||||||||||||||||| |||||||||||||||| || | |||| |||||| |||  ||||||||| |||| |||| |||||||||||||||||||     
T  12000350 gaccgttttacaaataatatctcatggatttattggcactgctctttctttcttggcaaaaactagttatgatagactatgtcttctttatcttgacgaa 12000251  T
Q  168 atgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    ||||||||||||||||||||||||  ||||||| || ||||||||||||||||||| ||||    
T  12000250 atgggcggaatggctatcccaatgcaaaaaatattctcgattttcactatcttatcaatga 12000190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 37986473 - 37986568
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  37986473 gttatgatagactacgtcttctttatcttgacgaaatgggtggaatggctatcccaatgccaaaaatattcacgattttcactatcttatcgatga 37986568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 36248894 - 36248799
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| |||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||| |||||||||||||||||||||||||||    
T  36248894 gttatgatagactacgtcttctttatcttgacgaaatggacggaatagctatcccaatgccaaaaatattcacgattttcactatcttatcgatga 36248799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 40182193 - 40182115
Alignment:
Q  149 tcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatg 227  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  40182193 tcttctttatcttgacgaaatgggcggaatggctatcccaatgccaaaaatattcacgattttcactatcttatcgatg 40182115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 12367977 - 12368062
Alignment:
Q  143 actacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  12367977 actacatcttctttattttgacgaaatgggcggaatggctatcccaatgccaaaaatattcacgattttcactatcttatcgatga 12368062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 15054223 - 15054127
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatgat 229  Q
    |||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||| ||||||    
T  15054223 gttatgatagactacgtcttctttatcttgacgaaatgggcggaatgactatcccaatgccaaaaatattcacgattttcactatcatattgatgat 15054127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 29231673 - 29231578
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| ||||||| |||||||||||||||| || || |||||| |||||||||||  ||||||| |||| ||||||||||||||||||||||    
T  29231673 gttatgatagactacgttttctttatcttgacgaaataggtggaatgactatcccaatgcaaaaaatattcactattttcactatcttatcgatga 29231578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 10322371 - 10322167
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    ||||||| || |||||||||||||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||||||| ||| |    
T  10322371 ataattccagaaattggttctataagtgatattgggctcaacggggccgttttacaaataatatctcatagatttattggcgctaccctttttttcttgg 10322272  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    || |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  10322271 caagaactagttatgataaattacgtcttctttatcttgacgaaatgggcggaatggctatcccaatgccaaaaatattcacgattttcactatcttatc 10322172  T
Q  224 gatga 228  Q
    |||||    
T  10322171 gatga 10322167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 33688916 - 33689120
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    ||||||||||||||||||| |||||||||||||||||||||||   | |||||||||||||||| ||||||||||||||||||||||||||||| ||| |    
T  33688916 ataattctaggaattggttttataagtgatattgggctcaacggagctgttttacaaataatatctcatggatttattggcgctaccctttttttcttgg 33689015  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    || |||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  33689016 caagaactagttatgataaactacgtcttctttatcttgacgaaatggacggaatgactatcccaatgtcaaaaatattcacgattttcactatcttatc 33689115  T
Q  224 gatga 228  Q
    |||||    
T  33689116 gatga 33689120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 510637 - 510840
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||||| ||| ||||||||| ||| |    
T  510637 ataattctaggaattggttctataagtgatactgggctcaacggggccattttacaaataatatctcatggatttattggggctgccctttttttcttgg 510736  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  510737 caggaactagttatgatagactacgtcttctttatcttgacgaaatgggcggaatggctatcccaatgccaaaaatattcacgattttcactatcttatc 510836  T
Q  224 gatg 227  Q
    ||||    
T  510837 gatg 510840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 18087300 - 18087097
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||||| ||| ||||||||| ||| |    
T  18087300 ataattctaggaattggttctataagtgatactgggctcaacggggccattttacaaataatatctcatggatttattggggctgccctttttttcttgg 18087201  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  18087200 caggaactagttatgatagactacgtcttctttatcttgacgaaatgggcggaatggctatcccaatgccaaaaatattcacgattttcactatcttatc 18087101  T
Q  224 gatg 227  Q
    ||||    
T  18087100 gatg 18087097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 31317216 - 31317014
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctacccttttt-tctttg 123  Q
    |||||| |||||||| ||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||| |||||||| |||| |    
T  31317216 ataattttaggaattagttctataagtgatattgggctcaacggggccgttttagaaataatatctcatggatttattggcgctgccctttttgtcttgg 31317117  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  31317116 caggaactagttatgataaactatgtcttctttatcttgacgaaatgggcggaatggctatcccaataccaaaaatattcacgattttcactatcttatc 31317017  T
Q  224 gat 226  Q
    |||    
T  31317016 gat 31317014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 44209118 - 44209323
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacg-agaccgttttacaaataatatatcatggatttattggcgctaccctttt--ttctt 121  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| ||||  |||||    
T  44209118 ataattctaggaattggttctataaatgatattgggctcaacggagac-gttttacaaataatatctcatggatttattggcgctaccattttttttctt 44209216  T
Q  122 tgcaggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatctta 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| | |||| |||||||| |||||||||| |||||||||    
T  44209217 tgcaggaactagttatgataaactacgtcttctttatcttgacgaaatggacggaatggctattctaatgccaaaaatattcacgatttttactatctta 44209316  T
Q  222 tcgatga 228  Q
    |||||||    
T  44209317 tcgatga 44209323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 35 - 227
Target Start/End: Complemental strand, 25422728 - 25422535
Alignment:
Q  35 gaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttgcaggaactag 133  Q
    ||||||||||||||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||||| ||| ||||||||| ||| |||||||||||    
T  25422728 gaattggttctataagtgatactgggctcaacggggccattttacaaataatatctcatggatttattggggctgccctttttttcttggcaggaactag 25422629  T
Q  134 ttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatg 227  Q
    ||| |||||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  25422628 ttatgataaattacgtcttctttatcctgacgaaatgggcggaatggctatcccaatatcaaaaatattcacgattttcactatcttatcgatg 25422535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 35060553 - 35060758
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataata-tatcatggatttattggcgctaccctttttt-cttt 122  Q
    ||||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||| | |||||||||||||| |||||||||||||| |||     
T  35060553 ataattctaggaattggttctataagtaatattgggctcaactggtccgttttacaaataataatctcatggatttattgacgctaccctttttttcttg 35060652  T
Q  123 gcaggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttat 222  Q
    ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| | | ||||||||| |||||||||    
T  35060653 gcaggaactagatatgataaactacgtcttctttatcttgacgaaatgggcggaatggatatcccaatgccaaaaacatttacgattttcgctatcttat 35060752  T
Q  223 cgatga 228  Q
    ||||||    
T  35060753 cgatga 35060758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 11670665 - 11670571
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| |||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  11670665 gttatgatagactacgtcttctttatcttgacgaaatgagcggaatggctatcccaatgccaaaaata-tcacgattttcactatcttatcgatga 11670571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 53571273 - 53571368
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| ||||    
T  53571273 gttatgatagactacgtcttctttatcttgacgaaatgggcggaatggctatcccaatgccaaaaatattcacgattttcaccatcttatcaatga 53571368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 36 - 228
Target Start/End: Complemental strand, 41139690 - 41139497
Alignment:
Q  36 aattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttgcaggaactagt 134  Q
    |||||||||||||||||||||||||||||||  | |||||||||||||||||| |||||||||||||||||||||| |||||| ||| ||||||||||||    
T  41139690 aattggttctataagtgatattgggctcaacagggccgttttacaaataatatctcatggatttattggcgctaccatttttttcttggcaggaactagt 41139591  T
Q  135 tacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    || ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  41139590 tatgataaactatgtcttctttatcttgacgaaatgggcggaatggctatcccaatgccaaaaatattcacgattttcactatcttatcgatga 41139497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 13920705 - 13920501
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||| | ||||||||||||| ||| ||||||||| ||| |    
T  13920705 ataattctaggaatttgttctataagtaatattgggctcaacggggccgttttacaaataatatcttatggatttattggtgctgccctttttttcttgg 13920606  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
     |||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13920605 gaggaactagttatgataaactacgttttctttatcttgacgaaatgggcggaatggctatcccaatgtcaaaaatattcacgattttcactatcttatc 13920506  T
Q  224 gatga 228  Q
    |||||    
T  13920505 gatga 13920501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 43440497 - 43440701
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctacccttttttctttgc 124  Q
    ||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||    
T  43440497 ataattctaggaatttgttctataagtgatattgagctcaacgggaccgttttacaaataatatctcatggatttattggcgctgcccttttttcttggc 43440596  T
Q  125 aggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcg 224  Q
    |  ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||  ||||||| |||||||||| |||||||||| |    
T  43440597 aaaaactagttatgataaactacgtcttctttatcttgacgaaatggacggaatggctatcccaatgctaaaaatattcacgatttttactatcttattg 43440696  T
Q  225 atgat 229  Q
    |||||    
T  43440697 atgat 43440701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 38693093 - 38693293
Alignment:
Q  29 ttctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttgcagg 127  Q
    ||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||    
T  38693093 ttctaagaattggttctataagtgatattgggctcaacggggctgttttacaaataatatctcatggatttattggcgctaccctttttttcttggcagg 38693192  T
Q  128 aactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatg 227  Q
    ||||||||| ||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||    
T  38693193 aactagttatgataaactatgtcttttttatcttgacgaaatgggcggaatggctatcctaatgccaaaaatattcacgattttcactatattatcgatg 38693292  T
Q  228 a 228  Q
    |    
T  38693293 a 38693293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 8217630 - 8217834
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt-ctttg 123  Q
    ||||||||||||||||||||||||| ||||||| ||||||||  | |||||||||||||||||| |||||||||||||||| |  ||||||||| ||| |    
T  8217630 ataattctaggaattggttctataaatgatattcggctcaacagggccgttttacaaataatatctcatggatttattggcaccgccctttttttcttgg 8217729  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| |||| ||||||| |||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  8217730 caggaactagttatgatagactacgttttctttatcttgacgaaatgggtggaatggctatcccaatgccaaaaatattcacgattttcactatcttatc 8217829  T
Q  224 gatga 228  Q
    |||||    
T  8217830 gatga 8217834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 26865435 - 26865530
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| |||||| |||||||||||||| || |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  26865435 gttatgatagactacgccttctttatcttgaggaaatgggcggaatggctatcccaatgccaaaaatattcacgattttcactatcttatcgatga 26865530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 6482 - 6684
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctacccttttt-tctttg 123  Q
    |||||| |||||||| ||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||| |||||||| |||| |    
T  6482 ataattttaggaattagttctataagtgatattgggctcaacggggccgttttagaaataatatctcatggatttattggcgctgccctttttgtcttgg 6581  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatc 223  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  6582 caggaactagttatgataaactatgtcttctttatcttgacgaaatgggcggaatggctatcccaataccaaaaatattcacgattttcactatcttatc 6681  T
Q  224 gat 226  Q
    |||    
T  6682 gat 6684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 5079123 - 5079327
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctttttt--cttt 122  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||| |||  ||||||||||| || |||||||||  |||     
T  5079123 ataattctaggaattggttctataagtgacactgg-ctcaacgaggccgttttacaaataatatctcacagatttattggcactgcccttttttttcttg 5079221  T
Q  123 gcaggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttat 222  Q
    |||||||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||||||  |||||||| |||||||||||||||||||||    
T  5079222 gcaggaactagttatgatagactacgtcttctttatcttgacgaaatgggcggaaaggctatcccaattccaaaaatattcacgattttcactatcttat 5079321  T
Q  223 cgatga 228  Q
    ||||||    
T  5079322 cgatga 5079327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 17246147 - 17246052
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  17246147 gttatgatagactacgtcttctttatcttgacgaaatgggaggaatggctatcccaatgccaaaaatattcacgattttcactatcttatcgatga 17246052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 24441 - 24268
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccctt-ttttctttg 123  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| |||||||||| ||||||||| ||||||| |    
T  24441 ataattctaggaattggttctataagtgataatgggctcaacgaggccgttttacaaataatatctcatagatttattggtgctaccctttttttcttgg 24342  T
Q  124 caggaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaa 197  Q
     |||||||| ||| |||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||    
T  24341 gaggaactaattatgataaactacatcttctttatcttgacgaaatgggcggaatgactatcccaatgccaaaa 24268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 22972 - 23052
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttca 213  Q
    |||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  22972 gttatgatagactacgtcttctttatcttgacgaaatgggcggaatggctatcccaatgccaaaaataatcacgattttca 23052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 239741 - 239836
Alignment:
Q  133 gttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    |||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  239741 gttatgatagactacgtcttctttatcttgacgaaatgggcggaatggctatcccaatgccaaaaatattcacgattttcactatcttatcgatga 239836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 38553 - 38446
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccc-ttttttctttg 123  Q
    ||||||||||||||||||| |||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||| || ||| ||||||||| |    
T  38553 ataattctaggaattggttatataagtgatattgagttcaacggggccgttttacaaataatatatcatggatttattggcactgccctttttttcttgg 38454  T
Q  124 caggaact 131  Q
    ||||||||    
T  38453 caggaact 38446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 35812 - 35711
Alignment:
Q  127 gaactagttacgataaactacgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgat 226  Q
    |||||||||| |||| ||||||||||||||||||||| || |||||||||||  ||||||||||| |||||||| ||| |||||||||||||||||||||    
T  35812 gaactagttatgatagactacgtcttctttatcttgatgaaatgggcggaataactatcccaatgccaaaaatattcatgattttcactatcttatcgat 35713  T
Q  227 ga 228  Q
    ||    
T  35712 ga 35711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 172314 - 172420
Alignment:
Q  25 ataattctaggaattggttctataagtgatattgggctcaacgagaccgttttacaaataatatatcatggatttattggcgctaccc-ttttttctttg 123  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||||| ||| ||| ||||||||| |    
T  172314 ataattctaggaattggttctataagtgatactgggctcaacggggccattttacaaataatatctcatggatttattggggctgccctttttttcttgg 172413  T
Q  124 caggaac 130  Q
    |||||||    
T  172414 caggaac 172420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 9701 - 9783
Alignment:
Q  146 acgtcttctttatcttgacgacatgggcggaatggctatcccaatgtcaaaaatactcacgattttcactatcttatcgatga 228  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||    
T  9701 acgtcttctttatcttgacgaaatgggcggaatgactatcccaatgcaaaaaatattcacgattttcactatcttatcgatga 9783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University