View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_low_47 (Length: 252)
Name: NF0934_low_47
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4634178 - 4634420
Alignment:
| Q |
1 |
attgacgaccattgacttgattacagaaatatactaagtataaattaattttgtttaccaaaatcattctannnnnnnnnatagattcaattcacgggag |
100 |
Q |
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| T |
4634178 |
attgacgaccattgacttgattacagaaatatactaagtataaattaattttgtttaccaaaatcattctatttttttt-atagattcaattcacgggag |
4634276 |
T |
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| Q |
101 |
attattcttgnnnnnnnngttatcattctatcaatacgaagtttccaccaccggtgattaatctctattgtagaatttctgggacgcgtataagttgagt |
200 |
Q |
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| T |
4634277 |
attattcttgttttttttattatcattctatcaatacgaagtttccaccaccggtgattaatctctattgtagaatttctgggacgcgtataagttgagt |
4634376 |
T |
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| Q |
201 |
tctcccattgcagctggatttttctattcgtaagagcctatgat |
244 |
Q |
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| T |
4634377 |
tctcccattgccgctggatttttctattcataagagcctatgat |
4634420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 4640815 - 4640881
Alignment:
| Q |
5 |
acgaccattgacttgattacagaaatatactaagtataaattaattttgtttaccaaaatcattcta |
71 |
Q |
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| T |
4640815 |
acgaccattgacttgattacataaatatactaagtataaattaattttgtttacaaaaatcattcta |
4640881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 4670401 - 4670467
Alignment:
| Q |
2 |
ttgacgaccattgacttgattacagaaatatactaagtataaattaattttgtttaccaaaatcatt |
68 |
Q |
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| T |
4670401 |
ttgacgaccattgactacattacagaaatataccaagtataaattaattttgtttgcaaaaatcatt |
4670467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 4649921 - 4649954
Alignment:
| Q |
38 |
gtataaattaattttgtttaccaaaatcattcta |
71 |
Q |
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| T |
4649921 |
gtataaattaattttgtttacaaaaatcattcta |
4649954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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