View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_low_5 (Length: 653)
Name: NF0934_low_5
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 82 - 480
Target Start/End: Original strand, 30723179 - 30723562
Alignment:
| Q |
82 |
attatactgcactatatttaagttgctacaagcagaatagtctcgagcttctaaaaaattgacatatttaaagataaatatagtaatatacagcatagct |
181 |
Q |
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| T |
30723179 |
attaaactgcactatatttaagttgctacaagcagaatagtctcgagcttctaaaaaattgacatatttagagataaatatagtaatatacagcatagct |
30723278 |
T |
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| Q |
182 |
aattaataacgtggatatggatgtatcacaccaagagtaaaaacaataacatgctgctataaagccaatgatgtaatgttttttcttttctaacttcacc |
281 |
Q |
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| T |
30723279 |
aattaataacgtggatatggatgtatcacaccaagaggaaaaacaataacatgctgctataaagccaatgatgtaatgttttttcttttctaacttcacc |
30723378 |
T |
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| Q |
282 |
aaacttaattcattgatatttaatatactatatgactatttataagagtatattattaatgttcaattcccgtgtgtagttggttggttttttggatgtg |
381 |
Q |
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| T |
30723379 |
aaacttaattcattgatatt--------tatatgactgtttataagagtatattattaatgttcaattcccgtgtgtagttggttggttttttggatgtg |
30723470 |
T |
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| Q |
382 |
ttaggaagcaacatgtggaaaacaattggaatgaatgatgtggtgtaggaagcaagtaggtgagtgagaatgatcaatccaggt-aaaatggtgaatgcc |
480 |
Q |
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| T |
30723471 |
ttaggaagcaacatgtggaaaacaattg----gaatgctgtggtgtaggaagcaagtag----gtgagagtgatccatccaggtaaaaatggtgaatgcc |
30723562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 510 - 565
Target Start/End: Original strand, 30723592 - 30723647
Alignment:
| Q |
510 |
tatttattcataattttgtgcatgtgagaaagagaactgttggctccttggaatat |
565 |
Q |
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| T |
30723592 |
tatttattcataattttgtgcatgtgagaaagagaactgttggctccttggaatat |
30723647 |
T |
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