View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_low_57 (Length: 211)
Name: NF0934_low_57
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 13614576 - 13614701
Alignment:
| Q |
1 |
tgtcaggctgtccaatattacttaataataagttgttaaagagacaaaggcaagtagaaaatttgaagatgcttgatgataacaaagaaagtactaccca |
100 |
Q |
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| T |
13614576 |
tgtcaggctgtccaatattacttaataataagttgttaaagagacaaaggcaagtagaaaatttgaagatgcttgatgataacaaagaaagtactaccca |
13614675 |
T |
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| Q |
101 |
ataccaatcaacttcctgcatccaca |
126 |
Q |
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| T |
13614676 |
ataccaatcaacttcctgcatccaca |
13614701 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 31246811 - 31246927
Alignment:
| Q |
3 |
tcaggctgtccaatattacttaataataagttgttaaagagacaaaggcaagtagaaaatttgaagatgcttgatgataacaaagaaagtactacccaat |
102 |
Q |
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| T |
31246811 |
tcaggctgtccaaatttacttaataataagatgttagagagacaaaggcaaaatgaacatttggagatgct---tgatattaaagaatgtactactcaat |
31246907 |
T |
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| Q |
103 |
accaatcaacttcctgcatc |
122 |
Q |
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| T |
31246908 |
accaaccaacatccttcatc |
31246927 |
T |
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